Prunus mume (Japanese apricot): 103326162 Help Entry 103326162         CDS       T03196                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pmum  Prunus mume (Japanese apricot) Pathway pmum03030   DNA replication pmum03410   Base excision repair pmum03420   Nucleotide excision repair pmum03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pmum00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     103326162    03410 Base excision repair     103326162    03420 Nucleotide excision repair     103326162    03430 Mismatch repair     103326162  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pmum03032]     103326162    03400 DNA repair and recombination proteins [BR:pmum03400]     103326162 Enzymes [BR:pmum01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      103326162     6.5.1.6  DNA ligase (ATP or NAD+)      103326162     6.5.1.7  DNA ligase (ATP, ADP or GTP)      103326162 DNA replication proteins [BR:pmum03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     103326162  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      103326162 DNA repair and recombination proteins [BR:pmum03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      103326162    NER (nucleotide excision repair)     Other NER factors      103326162    MMR (mismatch excision repair)     Other MMR factors      103326162 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  103326162 NCBI-ProteinID:  XP_008226585 LinkDB All DBs Position LG1:complement(7458014..7466688) Genome browser AA seq 789 aa AA seqDB search MLSRSLCSCYCLRPRSLHHLTTSISLFRSKPSSLSLTLISLSPKNPNLRAMSSRPSAFDA LMSGARAAAAKKKPQASPSKKRKTLEPNPIENPQLLLKPENGSPTQAPESKEVKEALESS SNGGQVVPPAKKVCSAAGAQERTAELKSRIALLKKKAGDFDPKLMANWGEGERVPFAFVC LAFDLIANETGRIAITDIVCNLLRTVMHTTPEDLVPVVYLAANRIAPAHEGLELGIGDAS IIKALAEACGRTEAHVKKQYKELGDLGLVAKASRSSQSMMRKPDSLTVTKVFSTFRQLAK ESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLAALGQAAVHAEKH STPPSHIQSPIEEAAKIVKQVYSLLPDYDKIIPALLSGGVWNLPKTCSFTLGVPVGPMLA KPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVVAV SRLKKSSVTSFVLDCELVAYDREKQKILPFQVLSTRARKNVAMSDIKVDVCIFAFDMLYL NGQPLIQEQLKVRRESLYDSFVEEAGFFQFATAITSNDIEEIQKFLDAAVDSSSEGLIIK TLNKDATYEPSKRSLNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS NNEEFQSICKIGTGFSEAMLEERSASLRTKVIPKPKSYYRYAETMNPDVWFDASEVWEVK AADLTISPVHRAAVGIVDPNKGISLRFPRLVRVREDKPPEQASSSAQVAEMYSAQANTRS NNQDDNEDD NT seq 2370 nt NT seq  +upstreamnt  +downstreamnt atgctctcccgatcattgtgttcatgctattgtctacgcccacgctctctccaccatctc accacctccatttctctcttccgctccaaaccctcttctctctctctcaccctcatttcc ctctccccgaaaaaccctaatcttcgcgccatgtcctctcgcccctccgccttcgacgct ctcatgtccggcgctcgggccgccgccgccaagaaaaagccccaagcttcaccctccaag aagcgaaaaaccctagaacctaaccctattgaaaacccccaattgctattgaaacccgaa aatggcagtccaacccaagccccagaatccaaagaagtcaaagaagctctagaaagttct agtaatggcggccaggtggttccccccgcgaaaaaagtgtgctcggcggcaggtgctcag gagcggacggcggaattgaagagccgaatcgctctgttgaagaagaaagccggtgacttt gacccgaaattgatggcgaattggggcgagggcgagagggttccgtttgcgtttgtttgt ttggcttttgatttgattgctaacgagacgggtcggattgcaatcacggatatagtgtgt aacctgttgaggactgtaatgcacaccacgcctgaggatttggtgcccgtggtttatctg gcagcaaatcggattgcgccggcacatgagggattggagcttggaattggggatgcttcg attatcaaggcgcttgcagaggcttgtgggaggactgaagcacatgttaagaaacaatac aaggaattgggagatttgggtcttgttgcaaaagcaagccgttcatctcaatctatgatg cgcaagcctgattcgttaactgtgaccaaggttttcagtacatttcgtcaacttgctaag gaatctgggaaggatagtcaggagaagaaaaagaaccatatcaaggcacttcttgttgct gccactgattgtgaacctcaatatctgatccgtttgcttcagacaaagttgcgaattggg ttggcagagcagactctcttagctgcattgggacaagctgcagtgcatgctgaaaaacat tctacaccaccttctcatattcagagtcctatagaagaggctgcaaagattgttaagcaa gtgtactctctacttcctgattacgataaaatcatccctgcccttttaagtggtggtgtg tggaatcttccgaagacatgtagctttactttgggtgtcccagttggacctatgctagca aagccaactaaaggtgtatctgagattgtacagaagtttcaggatacagaatacacctgt gaatacaagtatgatggagaacgcgcccagatacattacatggaggatggttctgttgag atatacagtcgaaatgctgaacgaaacactggaaagttccctgatgttgttgttgcagtg tcgaggttaaagaagtcatctgtaacgtcatttgttttggattgtgaattggttgcttat gaccgtgaaaaacagaaaattcttcctttccaggtactcagcactagagctcgtaaaaat gtggccatgagtgatattaaggtcgatgtctgcatatttgcttttgacatgttgtatctt aatggacaaccactaattcaggaacaactgaaagttcgtagagagagtctttatgactct tttgtggaagaagctggattttttcagtttgccacagcaataacatcaaatgatattgaa gaaatacaaaagtttcttgatgctgcagttgattcaagttctgagggtttaattatcaaa acattgaacaaagatgctacttacgagccttcaaagcggtcacttaactggctgaaattg aagaaagattatatggagagtattggggactcactagacttggtgcctattgctgctttc catggccgggggaaacgtacaggtgtctatggtgctttcctccttgcttgttatgatagc aacaatgaagagtttcaaagcatttgtaaaataggcactggattctctgaagcaatgctt gaagaacgttctgccagtctccgtactaaagtgatacccaaacctaagtcatactatcgt tatgcagaaacaatgaatcccgatgtatggtttgatgcctctgaggtttgggaagtgaaa gctgcagacttgactattagccctgttcatcgcgccgcagttggcatagtggatcctaat aagggtatttctcttcgatttccacgtcttgttcgtgttcgggaggataaacctccagag caagcctcatcatctgcgcaggttgctgagatgtattctgctcaagctaacactcgttcg aacaatcaagatgacaacgaagatgattaa

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