Prunus mume (Japanese apricot): 103331118
Help
Entry
103331118 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103331118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103331118
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103331118
Spliceosome [BR:
pmum03041
]
Complex C
Other components
Step II factors
103331118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
ABC_tran
nSTAND3
AAA_30
TsaE
T2SSE
Sigma54_activ_2
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
103331118
NCBI-ProteinID:
XP_008231949
LinkDB
All DBs
Position
LG5:complement(8131186..8136154)
Genome browser
AA seq
1194 aa
AA seq
DB search
MAATDDGLKKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRNCETVDEFDTKLKKNG
AEMPDYFVRTLLTIIHAILPPKPKPEKDLKKESASDGRKTKFKALAVADNKDRVKDIEKE
IEMETKEKRNRREEQDEEREEDRRRGSDRYREGDRDRDRDRHRGGRDRDGRERRRERYDR
DERRRDTHYNDDGDDRGRHTDRYNKHKRDGYEDNGDVKEDGDDRRGNRDRQNGQNNTDEP
ELYQVYKGRVSRVMDTGCFVQLNDLRGKEGLVHVSQMATRRISNAKDVVKRDQEVYVKVI
SISGQKLSLSMRDVDQHTGKDLLPLKKXDGLRTNPLSSKDRPVTRIGISGIRIEEEDDVF
VPSRRRPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDEETDGMLYQEEGAEEELEIELNE
DEPAFLNGQSRYSVDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPK
DLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTISFGQRSKLSIQEQRQS
LPIYKLKKELIAAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAAM
SVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVVML
DEAHERTIHIDVLFGLLKKLVKLRPDLRLIFTSATLDAEKFSGYFFNCNIFTIPGRTFPV
EILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNV
PELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNV
YNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRIN
LGTTTLTMKAMGINDLLSFDYMDPPSPQALISAMEQLYSLGALDEEGLLPKLGRKMAEFP
LDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLT
LLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIR
KAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMRE
VTVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacggacgatggtttgaagaagctcgagtacctttccttggtttccaaggtc
tgttcagagctcgaaacccatataggggttggggacaaagttctggcggagttcatcact
gagttgggacgaaactgcgagacggtggacgagttcgacaccaaattaaagaaaaatggt
gccgagatgcccgattactttgtccgtacactcctcactatcattcacgctattcttcca
ccgaagccaaagccggagaaggacttgaagaaagagagcgcttctgatggtaggaagacc
aagtttaaggctttggctgtcgccgataataaagatagagtcaaggacatcgagaaggaa
attgagatggagaccaaggaaaagcgaaacagaagagaagaacaagacgaagagcgagaa
gaagataggcgtagaggtagtgatagatatagggaaggagatagagatcgagatcgagat
agacacagaggaggtagagatagagatgggagggaaaggcgaagggaaaggtatgataga
gatgagaggcgtagagatacacattataatgatgatggtgacgacaggggaaggcataca
gatcgatacaataagcataagagagatgggtatgaagacaatggagatgtcaaggaagat
ggtgatgataggagaggtaatagggatcggcagaatggccagaacaatacggatgagccc
gaattgtatcaggtttataagggcagggtttcaagagtgatggacaccggttgttttgtt
cagttgaatgatttaagagggaaggagggtctggttcacgtttcacaaatggcaactcgg
cgaattagcaatgctaaggatgtggtgaagagggatcaggaagtttatgtgaaggtgatt
tcaatttcaggtcaaaagttgagcctttcaatgagggacgttgatcaacatacagggaag
gatttgctccccttgaagaagngtgacggtcttaggacaaacccattgtcgtcaaaggat
aggcctgtgactaggattggtatttctgggattaggattgaggaagaggatgatgttttt
gtcccatcacgccgccggccattgaagagaatgagctcgccagagaagtgggaagccaaa
cagttgattgcctcaggtgttttgggtgttacagagtatcctatgtatgatgaggaaacc
gatgggatgctttatcaagaagagggagctgaggaagagcttgagattgagctcaatgag
gatgagccagcctttttaaatggacagagcaggtattctgttgatatgtcacctgtgaaa
atctttaagaatccagaagggtcactaggtcgtgcagctgctcttcagtctgcactcatt
aaggagcgtagagaagtgcgtgagcagcaacaaagaaccatgttggattctatcccaaag
gatctcaatcgtccctgggaagatccaatgccagagactggtgagaggcatcttgcacaa
gaacttagaggtgttggtttgtcggcatatgatatgcctgagtggaagaaggatgctttt
gggaaaaccatcagttttgggcagaggtctaaactctcaatccaggaacagaggcagagc
ttgcctatctacaagctgaagaaagaattgattgcagcggtgcacgagaaccaagtgctt
gttgtcattggtgagactggttcgggtaagacaacacaggtaacgcagtatcttgcagaa
gcgggttacacgacaatgggtaagattggttgtacacagccacgtagggtggctgccatg
tctgtggccaagagggttgctgaagagtttggttgtcgcttaggagaggaagttggctat
gcaattcgttttgaggattgcactggtccagatactgtcatcaagtacatgactgatggt
atgcttcttagggagattttgattgacgagaacctttctcagtattctgtggtcatgctt
gatgaagctcatgagaggacaatccacatagatgttctttttggactgctgaagaagctt
gtgaagctgagaccagaccttcgtttgattttcacatctgctactttagatgcggagaag
ttctctggttattttttcaactgtaacatcttcactatccctgggagaacttttcctgta
gagatactctacactaaacagccggaaagtgactaccttgatgcatctctaataactgtt
ctacaaatacacttgacagaacctgaaggtgacatccttcttttcttgactggacaagaa
gagattgattttgcatgccagtctctttatgagaggatgaaaggtcttggtaaaaatgtc
cctgagttgattatcctaccagtgtatagtgcccttcctagtgaaatgcagtcaaggata
tttgatcctgccccaccaggtaagaggaaagtagttgtggctactaatattgctgaggca
tcactgaccattgatgggatattttatgtcattgatcctggttttgcaaagcaaaatgtt
tataaccctaagcaggggctagattcactggtcataactccaatttcccaagcatcagcc
aagcaacgagctgggcgtgctgggcgtacaggccctgggaaatgttaccgcctttacact
gagagtgcataccgcaatgagatgtcccctacttcaattccagaaatccagaggataaat
cttgggactactacacttacaatgaaagctatggggataaatgatctcttatcttttgat
tatatggatcctccttcaccccaagcactcatttctgccatggaacaattgtacagttta
ggagcactggatgaggaggggctgctccccaaattgggtaggaaaatggctgagtttcct
ctggatccacccttgtctaagatgctactggccagtgtggaccttggatgcagtgatgag
atcttgaccatcattgcaatgattcagaccggtaatattttttacaggcctagggaaaaa
caagcccaggcagatcagaagagagccaagtttttccagccagagggagatcatctgact
ttacttgcagtctatgaggcatggaaagctaagaatttttcagggccatggtgttttgag
aactttgttcaatctcgatccttgaggagggcacaggatgtcagaaagcagcttctcagc
atcatggacaagtataaactagatgttgtcagtgctggaaagaattttacaaagatcagg
aaggcaattacggcagggtttttcttccacggtgctagaaaggacccgcaggagggttat
agaaccctagtggagaatcaaccagtttatatacacccaagcagcgccctcttccagaga
caaccagattgggtgatctaccatgagctggttatgaccacaaaggagtacatgcgcgag
gtgacggtcgtcgaccccaaatggctcgtggaactggcacccaggttcttcaaagtggca
gatcccaccaagatgagcaagcgcaagcgtcaagaacgtattgaaccgctatacgacaga
taccatgaacctaactcttggcgtcttagtaagagacgtgcttga
DBGET
integrated database retrieval system
