Prunus mume (Japanese apricot): 103336617
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Entry
103336617 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103336617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103336617
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103336617
Spliceosome [BR:
pmum03041
]
Complex A
U2 snRNP components
U2 related factors
103336617
Complex B
103336617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
103336617
NCBI-ProteinID:
XP_008237900
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All DBs
Position
LG7:222757..228528
Genome browser
AA seq
1146 aa
AA seq
DB search
MEEGKHKSRKEGESKRSHRDRQREKERNGERHRDKDKDKRDRDSRRSEREKSSDSEDRYD
REKHRDRDTDRTRSRDDERERTRDRKREKDKEKEKERDRAREKEKERERERXXXXXEKEK
ERERERERREREREGEDREREKREREREREKDRDRERRIRERERRRDIDTDDTDDDVRER
GRKRHRKDENEYKEKERERSSSRSNRHRDDGDGSPRKKSDEDDSVKREKQPTREEELEDE
QRKLDEEMEKRRRRVQEWQELKRKKEESEREKRGEGDVDEPKSGKAWTLEGESDDEEVPS
LGKSERDMDVDGEDNLTDREAGGDAMVVDSENETDAPTLQNGADDAVGDEEVDPLDAFMN
SMVLPEVEKLNNAVEPSIVDEKNKDKKDDRSNGEQPRRGSNKSMGRIIPGEDSDSDYGDL
ENDDDPLEDEGDDEFIKRVKKTKAEKLSVVDHSKIDYDPFRKNFYIEVKEISRMTPEQVG
AYRKELELKIHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKPMPIQAQAVPVIMSGRDC
IGIAKTGSGKTVAFVLPMLRHIKDQQPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVL
GLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGRITNLRRVTYLVVDEAD
RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLARKVLNKPVEIQVGGRSVVNKD
IAQLVEVRLENERFLRLLELLGEWYEKGKILIFVESQNKCDALFRDLLRHGYPCLSLHGG
KDQTDRESTITDFKSNVCNLLIATSVAARGLDVKELELVINFDSPNHYEDYVHRVGRTGR
AGRKGCAITFVSEEDARYAPDLVKALELSEQVVPDDLKSLADSFTAKVNQGLEQAHGTGY
GGSGFKFNEEEDEVRRAAKKAQAKEYGFEDDKSDSEDEDEGIRKAGGDISQQAALAQIAA
IAAASKGSTASIQTPVPAAQLLPNSGLPVSLPGVLGLTLPGTAAAVAGTGLPVVGNDGAA
RAAAIAAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAA
ITTRGQYFPPGKVAGPGDRKLYLFIEGPTEQSVKRAKAELKRVLEDISNQALSLPGGAQQ
GRYQVL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggaagagggcaagcataaatccaggaaggagggggaatccaagaggagtcatcgagat
cggcaacgcgaaaaagagaggaatggagagagacacagggataaagataaagataagaga
gatcgtgatagtcggcgctctgagagagaaaagagttctgattctgaggataggtatgat
agagagaagcatcgagacagggacactgataggacacgaagccgggatgatgaaagagag
agaacgagagacaggaagagagaaaaagataaagagaaggagaaggagagagatagggct
agagagaaggaaaaggagagggagagggaaagannnnnnnnnnnnnaagaaaaagaaaag
gaacgagaaagagagagggagagaagggaacgagaaagagagggagaagatagagagagg
gaaaagagggagcgagagagggagagggaaaaggacagagatcgagagaggaggatacgg
gagagggagaggcgcagggacattgatactgatgatactgatgatgatgttagggagcgt
ggtaggaagcggcataggaaagatgaaaatgagtacaaggagaaagagagggaaaggagt
agcagcaggtcaaacagacatagggatgatggagatgggagcccgagaaagaagagtgat
gaagatgattcagttaagagagagaagcagccaactcgtgaggaggagttagaggatgaa
cagcggaaattggatgaggaaatggaaaagcggagaagaagagttcaggagtggcaagag
ttaaaaaggaagaaggaagaatctgagagagagaaacgtggggaaggggatgttgatgaa
cctaagtccggcaaggcctggactcttgaaggagaatctgatgatgaagaagtaccctca
ttagggaaatcagagagggatatggatgttgatggtgaagacaatctgactgacagagaa
gctggcggagatgctatggtggtagattctgagaatgaaacagatgcacctactttgcag
aatggggctgatgatgctgttggtgatgaagaagttgatccattagatgcttttatgaat
tctatggtgttgcctgaagttgagaagctgaacaatgctgtggaaccatcaattgttgat
gagaagaacaaggataaaaaggatgatcgaagcaatggtgaacagccaaggagaggttca
aataaatctatgggcagaataattcctggggaggattctgactcggattatggggacctt
gagaatgatgatgaccccttagaagatgaaggtgatgatgagttcataaaaagggtgaaa
aagacaaaagctgagaagctttctgtagttgatcactctaagatagattatgatccattc
cgcaaaaatttctatattgaggtgaaggagatctctagaatgactccagaacaggtgggt
gcatatcggaaagaattggaattgaagatacatggtaaggatgtgccaaagccgatcaag
acatggcaccaaactgggcttacaagtaaaatcttggaaacaataaagaagctaaactat
gaaaagccaatgccaattcaggctcaggcagtgcctgtaattatgagtggtcgagattgt
attggcatcgcaaaaactgggtcaggcaaaactgttgcattcgtgctgccaatgctgagg
catatcaaggaccagcaacctgtggtagcaggagatggacctattgggcttataatggca
ccaactagggagcttgttcagcagattcacagtgatattaaaaagtttaccaaggtactg
ggtctcaggtgtgtgcctgtgtatggaggttctggtgttgcccaacaaattagtgaattg
aagaggggagctgaaattgttgtctgtactcccggtaggatgattgacatactttgtaca
agtggagggagaataacaaatctgcgtagagtaacgtatttagtagtggatgaagctgat
cgaatgtttgacatgggttttgaacctcaaatcactcgaattgttcaaaatattcggcca
gatcgtcaaactgtattgttttctgccaccttccctcgccaggttgaagtcttggcacgc
aaagtcttgaacaaacctgtggaaatacaagttggtggtaggagtgttgtgaataaggac
atagcacaattggttgaagtgaggctggaaaatgaaaggttcttgagattgttagagtta
cttggggagtggtatgagaaaggaaaaattttgatatttgtcgagtcacagaataaatgt
gatgctttatttagggatctgcttagacatggatatccttgtctctcacttcacgggggc
aaagatcaaacagatcgtgagtccaccataactgattttaaaagcaatgtttgtaatttg
ttgattgcaactagtgttgctgcgagagggttagatgtcaaggagcttgaactggtgatc
aactttgatagtccaaatcactatgaagactatgttcaccgcgttggccgtacagggcga
gctggtcggaaaggctgtgctataacgtttgtctctgaggaagatgctagatatgctcca
gatcttgtcaaagcattggaactctctgagcaagttgttccagatgacctgaaatctctt
gcagatagtttcaccgcaaaagtaaatcagggactcgagcaagcccatggaactggttac
ggaggaagtggttttaaatttaatgaagaggaagatgaagtgaggagagcagcaaagaaa
gcacaagccaaagaatatggttttgaggatgacaagtcagattcagaagatgaagatgaa
ggtatccgaaaggcagggggagacatttcacagcaggctgcccttgctcagatagcagcc
attgctgctgcctctaaaggtagtacagcttcaattcagacccctgtgcctgctgcccaa
ctgcttcccaacagcggactgcctgtttctcttccaggtgtccttggtctaacattacca
ggaacagcagcagctgtggctgggactggtttgcctgttgttggcaatgatggggcagct
cgggctgcagcaattgcagctgcgatgaacttgcagcataatctggcaaagatccaagct
gatgcaatgcctgaacactatgaagcagagttggagataaatgattttccacagaatgct
cgatggaaggttacccacaaggaaactttgggacctatatcagagtggactggagctgcc
attactacgaggggtcagtatttcccaccaggcaaggttgcaggaccaggagatcgcaaa
ctctacttgtttattgagggccctactgaacaatctgtcaagagagccaaagcagaatta
aaacgtgttttggaagatatctcaaatcaggcattatcacttcctggtggagctcagcaa
ggcagatatcaagttctataa
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