Prunus mume (Japanese apricot): 103340335
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Entry
103340335 CDS
T03196
Name
(RefSeq) ubiquitin domain-containing protein DSK2b-like isoform X1
KO
K04523
ubiquilin
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103340335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103340335
03051 Proteasome [BR:
pmum03051
]
103340335
Membrane trafficking [BR:
pmum04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
103340335
Proteasome [BR:
pmum03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
103340335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
UBA
STI1-HOP_DP
TBK1_ULD
Ubiquitin_2
Exonuc_VII_L
Rad60-SLD_2
Dsc3_N
HOIP-UBA
XPC-binding
Motif
Other DBs
NCBI-GeneID:
103340335
NCBI-ProteinID:
XP_008241956
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Position
LG8:complement(11985553..11990587)
Genome browser
AA seq
545 aa
AA seq
DB search
MGGGGEGSVDDGTYSDDGDGVKVKVNVRCSNGSKFTVQINLESTVGSFKEVLSSKCDIPA
DQQRLIYKGRILKDDQTVQSYGLEADHTVHLVRGFAPPASANPAIATNAGVANSTQARGV
GSNDGGTLGGSGFGASPFPGLGLNGMGGTGGLFGAGLPDFEQVQQQLTQSPSVMRDIMNT
PAIQNLMNNPDIMRNLIMNNPQMREIIDRNPELAHVLNDPGTLRQTLEAARNPELMREMM
RNTDRAMSNIEATPEGFNMLRRMYENVQEPFMNATTMAGNAGSDGSNPFASLLGAQGGNQ
TRSDSMNGSPAPNTNPLPNPWSSTGTAGVAETNTTASNPISDARLQTPTPIAGLNFPEFE
ALGALPQDYNSMNQFMQNPAVSQIMQSLISNPQYMNQILGSNPQFRSMLDSNSHLREMMQ
NPEFLRQLASPETMQLLLTVQQSLMSQFGRQQQQSTQETGQTGGTTGSFNNTGLEMLMNM
FGGLGTGSLAVPNRPDVPPEELYAAQLSQLQEMGFFDRQENIRALMATAGNVHAAVERLL
GNSGL
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggaggtgagggttctgtggacgacgggacctactccgacgatggagatgga
gtcaaggtcaaggtcaacgtcagatgctccaatggctccaagttcaccgttcagattaac
ctcgaatccaccgttggatcgttcaaggaagttctctcatcaaaatgcgacattccggcc
gatcagcagcgtctgatttacaagggtcggatcttaaaggacgatcaaaccgtccaaagc
tatggtttggaggcagatcacactgttcacttggttcgtggttttgcaccgcctgcgtca
gccaaccctgctattgcaaccaatgctggagttgcaaattccacccaagcaaggggtgta
ggatccaatgatggtgggacattgggagggtctggttttggagcctcaccattcccagga
ctcggacttaatggtatgggtggcactggtggtctgtttggagctgggcttcctgacttt
gaacaagtgcagcaacaattgactcagagccccagcgtaatgagagacataatgaacacg
cctgccattcaaaatcttatgaataaccctgacataatgcggaacttgattatgaacaac
cctcaaatgcgtgaaattattgatcgaaatcccgagctagcacacgtacttaatgatcct
ggcacgctccgtcagacacttgaagcagcaagaaaccccgagcttatgcgtgagatgatg
cgtaacactgacagagccatgagcaacattgaagctactcctgagggatttaacatgctc
aggcggatgtatgaaaacgtacaagagccatttatgaatgcgacaacaatggctgggaat
gctgggagtgatggttcaaacccatttgcatctcttttgggggcccaaggtggcaaccaa
accagatctgattcaatgaatggttctcccgctccaaatactaacccacttcccaaccca
tggtcctctactggcacagctggagttgccgaaactaataccacagcatcgaatcctatc
agtgatgctaggctgcagacaccaactcccatagctggacttaactttccagagtttgaa
gcattgggtgccctgccacaggattacaattcaatgaatcagtttatgcaaaatccagct
gtttctcaaataatgcaaagcctcatctccaatcctcagtatatgaaccagattctaggt
tccaacccccagtttcgaagcatgcttgattccaattctcatttaagagaaatgatgcaa
aaccctgaatttcttcgtcagttggcttctcctgagactatgcagctgctcttgactgtg
cagcaatcacttatgtctcagtttggtcggcaacagcaacagtcaacccaggaaacaggt
cagactggtggaaccacaggatcattcaataacacggggctagagatgctgatgaacatg
tttggtgggcttggcactggcagcctggctgttcccaataggcctgatgtgccaccggaa
gaactctatgctgcacagctttcacaacttcaggagatgggtttctttgaccgacaagag
aacatacgggctctgatggccaccgcaggaaacgtccatgcagcagtagagcgacttttg
gggaattccggtttatag
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