Pedobacter mucosus: LOK61_16985
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Entry
LOK61_16985 CDS
T08291
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOK61_16985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_16985 (mfd)
Enzymes [BR:
pmuo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOK61_16985 (mfd)
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOK61_16985 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UKT63452
LinkDB
All DBs
Position
4077257..4080595
Genome browser
AA seq
1112 aa
AA seq
DB search
MNIRDLINRYKTDDRVTQFTKALNSTKNPKIQLKGLVGSADAIVALSSYFLLHKPLFFIL
PDREEASYFLSDLEGILDKQVLLFPSSYRKSFDFTQVDTANVLARAEVLNELNHDSEYGK
IVVSYPEAIAEKVIDRSALEKNTLEISLGAKLGIDFINEFLIDYDFDRRDFVYEPGQFSI
RGGIVDIFSFSSDLPFRIEFFGDEVESIRSFEIESQLSVADVKSLTIVPNVQAKFLTESN
ISILDYIDQDTQLWFKDVEFTLDIVKAGYKKAIELWKALSLAEKNLNPDWIDPKFAFTDE
KLLGDHLQDFPIIEFGKQFFYAAENRFEFETKPQPSFNKDFNLLIHNLKENEKAGIINFI
FTDSPKQVERLYAILEDIDKTAKFTPINSMLREGFVDPQIQTAFYTDHQIFDRYYKYKLK
KGYQKSQAITLKDLRELKSGDYVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDLLY
VNINSLNRIAKYSGKESGVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIKLYALRKTQAG
TAFSPDSYLQTELEASFIYEDTPDQLKATQDVKRDMESPYPMDRLVCGDVGFGKTEIAVR
AAFKAVAEGKQAAILVPTTILALQHFKTFSARLKDFPVTVDYINRFKTSKQIKDTLAEAA
IGKVDILIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTAKERLKAVRVNVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVNTELHVFNDKLIQEAVQFELDRGGQVFFVHNRVN
DLMQLGGLIQKLVPKARIGIAHGKLDGDALEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKEAEFKGLFENEPN
RPFVGFTQVDTDLELYIPDAYITNITERYNLYTELSKLSNETELAVFEKQLADRFGPVPP
QVKTMFSVVRLQWLGKKLGFEKISFKKNSLRGYFLSDKQSAYFDSTTFMKILTFAQNHPR
MCNLKEVKNTLRIAFDHINSVEEAMQTLELID
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgaatattcgagatttaattaatagatacaaaaccgacgatcgggtaacccagtttact
aaggcgttgaacagtacaaaaaatccaaaaatacaattaaaaggattggtaggctctgcc
gatgctattgttgccctgtcatcatactttttactacacaaacctttgttttttatactt
ccagatcgggaagaagcctcttatttcctgtcagatttagaaggtattttagataaacaa
gtgttacttttcccttcatcttaccgaaaatctttcgattttacacaggtagatactgca
aatgtattggctcgtgctgaagttttaaatgaacttaatcatgattcagaatacggtaaa
attgtagtttcttatcctgaagccattgctgaaaaggttattgatcgctctgcattagaa
aaaaatacactagaaattagtcttggtgctaaattaggcatcgatttcattaatgaattt
ttaattgattacgacttcgatagaagagattttgtttatgaacctgggcagttctccatt
cgaggtggtattgtagatattttttcgttttcatctgatttgcctttccgcattgagttt
tttggcgatgaggttgaaagcatccgcagttttgaaattgaaagtcagctttcggttgcc
gatgtaaaatcgcttacgattgttccgaatgttcaggcaaaatttttaacagaaagcaac
attagtattttagattatatcgatcaggatacacagctttggtttaaggatgtagaattt
actttagacattgttaaagcaggttataaaaaggctatagagctatggaaagcactttct
ttggcagaaaaaaaccttaatcccgattggattgatccaaaatttgcttttacagacgaa
aaattattaggtgatcatcttcaggatttcccaattatagaatttggaaaacagtttttt
tatgctgccgaaaatcgttttgaatttgaaacgaaaccgcagccatcattcaacaaagat
tttaatctgcttatccataatttaaaggaaaacgaaaaagcagggattatcaacttcatt
tttacagattcgccaaagcaggttgagcgtttatatgccattttagaagatatagacaaa
acggcaaaatttactccgataaatagcatgctgcgtgaaggctttgtggatccacagatt
caaactgccttttataccgatcatcaaatttttgatcgttactataaatacaagcttaaa
aaaggctatcagaaaagtcaagcaattaccttaaaagatcttcgggaacttaagtctggc
gattatgtaacgcacattgatcatggtattggaaaatatgccggattagaaaaggtagaa
gtaaacggtaaaacgcaggaaatgattcgtctggtttatgctgacaacgatttgctttac
gtaaatatcaactctttaaatcgcattgcgaaatacagcggaaaggaaagcggcgtacca
aaaatgaataaattaggtaccgatgcttgggataagctaaaaaaaactactaaaaaaaaa
gttaaagatattgcccgggatttaataaaactttatgccttgcgcaaaacgcaagctgga
acagccttttctcccgatagctatttacaaacagaattagaggcttcttttatttatgag
gatacgccagatcagcttaaagcaactcaggatgttaaaagagatatggaatctccatat
ccgatggatcgtttggtttgcggcgatgttggctttggaaagacagaaattgccgttcgg
gcagcttttaaagcggttgcagaaggcaaacaggcagctattttggtgccgacaactatt
ttagcactacagcatttcaaaactttttctgctcgtttaaaagatttcccggttacggta
gattatattaatcgctttaaaaccagcaaacaaattaaagatacactggccgaagcggct
attgggaaagtggatattttgattggtacgcatcgtttgctcagtaaagatgtaaaattt
aaggatctgggcatcatgattattgatgaggaacagaaatttggcgtaactgcaaaagag
cgtttaaaagctgttcgggtaaatgttgataccttaacacttaccgcaacaccaattccg
cgaaccttgcatttctctttaatgggcgctcgagatttgtctatcatcagtacgccaccg
ccaaatcgccagcctgtaaacacagaacttcatgtttttaatgataaattaatacaggaa
gcggtacaatttgagttggatagaggcggacaggttttctttgtacacaatcgtgtgaac
gatttaatgcagttgggtggtttaattcaaaaacttgtaccaaaagcaagaattggaatt
gcacacggaaagttagacggtgatgcattggaagatgtaatgcttgattttattaatggt
gaaaaggatgttttggtagctactacaattattgaagctggtttagacattccaaacgcc
aatacaatcatcatcaatcatgcgcatatgtttgggctaagcgatctacaccaaatgcgt
ggccgcgtaggtagaagcaataaaaaagctttctgttacttgctttcgccgcctttatct
acgctaacttcggaggccagaaaacgcttaagtgctattgaagaattttctgatttagga
agtggttttaacgtagccatgcgagatttagatatccgcggtagcggaaatttattaggt
gcagaacaaagtggttttattgcggaaattggttttgaaatgtatcataaaattttagat
gaagccattcaggaattaaaagaagcagagtttaaaggtttgtttgaaaatgaaccaaat
cgtccttttgtaggctttacacaggttgataccgatctagaactttacattccagatgct
tatataaccaacattaccgaacgttataatttgtatacagagctttcaaagttgagtaat
gaaacggaattagccgtatttgaaaagcaattggctgatcgttttggtcctgttccacca
caagttaaaacgatgtttagcgtggttcgtttgcagtggttgggtaaaaaactaggtttt
gaaaaaatcagttttaaaaagaatagtctacgaggttatttcttaagtgataaacaatcg
gcttatttcgattctaccacctttatgaaaatattaacttttgcacaaaatcatccacgg
atgtgtaatttaaaggaagttaaaaacacattacggattgcttttgatcatattaatagc
gtggaagaagcaatgcaaactttagaattgattgattaa
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