Protobothrops mucrosquamatus (Taiwan habu): 107282856
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Entry
107282856 CDS
T05763
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03013
Nucleocytoplasmic transport
pmur03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107282856 (UPF1)
03015 mRNA surveillance pathway
107282856 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107282856 (UPF1)
Enzymes [BR:
pmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107282856 (UPF1)
5.6.2.5 RNA 5'-3' helicase
107282856 (UPF1)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107282856 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107282856 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107282856
NCBI-ProteinID:
XP_029138926
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGGGG
VAAPGTPGLPGGGVGPGVGGPPSVIVPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAEL
NFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRA
KCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDIN
WDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKP
GVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIA
YFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTVVDYGDEIAIELRSSVG
APVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLP
KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC
APSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQL
KDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQ
ATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQV
QYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASS
GTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQE
VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALS
KQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREA
IIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQ
ANGPAAGRGNLKGKAGRGGRQKNRFGIPGAGQSNLPNSQASQDVVSQPFSQGPLTQGYIS
MSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagctcgcagacgttgactttcctcgacaccgaggag
gccgagctgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcaaacgccgcccgggggaggctccgggagcggcggaggaggcggcggc
gtcgccgcgccgggcaccccgggactcccggggggtggcgtcggacccggcgtggggggc
ccgccttccgtcatcgtgccggggcagctggacgcccaggtaaatggaccagatggcatc
ctccagaatggggcagtggatgacaatgtgcctaaaaccagccaacttcttgcagagctc
aattttgaagaagacgaggaagacacttactacaccaaggaccttcctgtacatgcctgc
agctattgtggcatccacgacccagcttgcgttgtctattgtaacaccagcaagaagtgg
ttctgcaacggacgtgggaatacttctggcagccacattgtgaaccatcttgtgagagcc
aagtgcaaagaagtgactcttcataaggatggtcctttgggcgagactgtcttggaatgt
tacaattgtggctgtcgtaatgtgtttcttcttggcttcatcccggccaaagctgactct
gtggttgttttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaat
tgggacagctcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtc
aaaattccttcagaacaggaacaactgagggcccggcagatcacagctcagcaaattaac
aaactagaagaactctggaaggagaacccatctgccactttggaggacctggaaaagcct
ggtgttgacgaagagccacagcatgtcctccttagatacgaagatgcttatcagtaccag
aacatctttggtcctctggtcaagcttgaagcagactatgacaagaaattgaaggaatct
cagactcaagacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcc
tacttcaccttaccaaagacagattcagatatgcgtttgatgcaaggggatgagatttgc
ctgagatacaaaggggatctggcaccactgtggaaaggaattggccatgtgattaaagtt
cctgacactgttgtagattatggtgatgagattgcaattgagttgagaagtagtgtcggc
gctcccgtggaagtgactcacaatttccaagtggattttgtatggaaatcaacatccttt
gatagaatgcagagtgccctaaaaacatttgctgtggatgaaacatccgtttctggctac
atctatcacaaacttctgggtcacgaagtggaagatgtcattattaaatgtcagttgcca
aagcgcttcacagcacaaggacttccggacctcaaccattctcaggtgtatgcagtgaag
acggttttgcagcgccccttgagtcttatccagggcccccctggcacaggcaagactgtg
acatcagccacaattgtgtatcacctggcaaggcaaggaaatgggcctgtgctggtttgt
gccccaagtaacattgctgtggaccagttgacagaaaaaatacatcagacggggctgaag
gtggtgcgcctgtgtgcaaagagccgcgaggccattgattcacctgtctctttcttagca
ctgcataaccagatcaggaacatggatagcatgccagagctccagaaactgcagcaactg
aaagatgagactggggaactgtcatccgctgatgagaagcgctaccgagcacttaaacga
acagctgagcgggaattgctaatgaatgcagatgtcatttgctgcacctgcgtcggagct
ggtgacccaagacttgcaaaaatgcagtttcgttccattttgatcgatgaaagcacacag
gccactgagccagagtgcatggtgcctgttgttcttggggcaaaacagttgatcctcgtg
ggcgatcattgccagctgggccctgtcgtgatgtgcaagaaggccgcgaaagcaggtctg
tcgcagtccctctttgagcgactggtggtgctgggcattcggcccatccgcctgcaagtc
cagtaccgcatgcacccggccctgagtgcttttccctccaacatcttttatgaagggtcc
ctccagaatggtgtcactgcagcagaccgcgtcaagaaggggtttgacttccagtggcct
cagccagacaagcccatgtttttctacgtgacccaagggcaagaagaaattgcaagctct
ggcacttcttatttgaacagaacagaggcagccaatgtggagaaaataaccactaagcta
ctgaaggctggtgcaaagccagatcagattggcatcatcacaccctatgagggccagcgt
tcctacttggtgcagtacatgcagtttagtgggtctttgcacaccaagctttatcaggaa
gttgaaatcgctagcgttgatgctttccaagggcgagagaaggacttcattatcctctcc
tgtgttagagccaatgaacatcaaggcattggcttcctgaatgacccccggcgtctcaat
gtggctctaacaagagcaagatacggggtcattattgttgggaatccaaaggccctctcc
aagcagcctctctggaatcacctcctgaattactacaaggagcaaaaggtcctggtggag
gggcccttgaacaatctccgcgagagcctcatgcagttcagtaagcctcgaaaattggtg
aacactatcaatccgggagcccggtttatgacaactgctatgtatgatgcccgtgaagct
attatccctggatccgtttatgatcgcagcagccaaggtcggccatccaacatgtatttc
caaacccacgatcagattgggatgatcagtgctgggcccagccatgtcaccaccatgaac
attcctatcccattcaacttggtgatgcctcccatgcctccaccggggtactttggacag
gccaatggaccagctgcaggacgcggaaacctgaaaggcaaagctggccgtggtgggcga
cagaagaaccggtttggcatcccgggggccggccagtcgaacctgcccaacagccaggcc
agccaggacgtggtctcccagcctttctcccagggccccctgacccagggctacatctcc
atgagccagccctcccagatgagccagcctggcctctcccagccagaactgtcacaggat
agttaccttggtgatgagtttaaatctcagattgacgtggccctgtcgcaggattccact
taccagggggaacgtgcatatcaacatggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
