Protobothrops mucrosquamatus (Taiwan habu): 107294977
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Entry
107294977 CDS
T05763
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107294977 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107294977 (MTREX)
03041 Spliceosome [BR:
pmur03041
]
107294977 (MTREX)
03009 Ribosome biogenesis [BR:
pmur03009
]
107294977 (MTREX)
03016 Transfer RNA biogenesis [BR:
pmur03016
]
107294977 (MTREX)
Enzymes [BR:
pmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107294977 (MTREX)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107294977 (MTREX)
Spliceosome [BR:
pmur03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107294977 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
107294977 (MTREX)
Ribosome biogenesis [BR:
pmur03009
]
Eukaryotic type
Pre-60S particles
Helicases
107294977 (MTREX)
Transfer RNA biogenesis [BR:
pmur03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107294977 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
107294977
NCBI-ProteinID:
XP_015679744
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEDDASSGLKETKGTPEAATSSKLGKQRDGKSVASAKIQAKKKRDAEF
NSADITALGKRPKLEDLSTDDLNLADVMPKVKVQAVETIEGCTHEVALPADMDFVALKAR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRNSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKINNL
EQQYNEIEIPNEENVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDD
FGWGVVVNFSKKSNVKLNSGELDPLYVAEVLLYCSKESLKNSATEAAKPAKPDEKGEMQV
VPVLVHLLSSISSVRLYIPKDLRPLDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIKDP
GLKKVIQKVEAFEHRMYSHPLHNDSNLETVYKLCERKTQIAVDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLSLFRPNLMD
VVYTWTNGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctgttcagcgtgttcgaagacgatgccagctctggc
ttaaaggaaacgaaggggacacccgaggcagccacttcaagcaagttaggaaaacaacga
gatggcaaatctgtggcctctgcaaaaatccaagccaaaaaaaaacgtgatgcagaattt
aatagtgcagatattacagctttgggaaaaagaccaaagttggaagacctctctacggat
gatcttaatttggcagatgtgatgccaaaagtaaaagtacaagctgttgaaacaattgaa
ggctgtacacatgaggttgctcttcctgcagatatggacttcgtagccctgaaggcaaga
actggaaaagctgcaaaggaatatccattcattcttgatgcttttcaaagagaagctatt
ttgtgtgtggataataatcagtctgttttagtatccgctcatacctcagcagggaaaact
gtatgtgcagagtatgccattgctttggctttaagagaaaaacagcgtgtgatatttacc
agtcctattaaagctcttagtaaccaaaaatatcgtgagatgtatgaagaatttcaagat
gttggcttgatgactggggatgtcaccatcaatcctacggcatcttgccttgtaatgacc
acagagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagttgcttgg
gttatatttgatgaaattcattacatgagaaattcagaacgtggtgtggtatgggaagaa
accattattttgctccctgataatgttcactatgtgtttctttctgccactattccaaat
gcacgtcagtttgctgaatggatatgtcatcttcacaaacagccctgccatgtgatctac
acagattacagaccgactcctttgcaacattatatttttccagcagggggagatggactt
caccttgtagttgatgaaaatggtgattttagagaagataattttaatacggccatgcag
gtacttcgtgatgcaggtgatttagccaaaggagaccagaaaggcaggaaaggaggaacc
aaaggtccctcaaatgtatttaagattgtaaagatgatcatggaaagaaacttccaacca
gtaattatattcagtttcagtaagaaagattgtgaagcctatgcacttcagatgacaaaa
ctggatttcaacacagatgaagaaaaaaggatggttgaggaagtgtttaacaatgcaatt
gattgtttgtctgatgaagacaagaagctcccacaagttgaacatgtgcttccactttta
aaacgtggtattggaatccatcatggaggcttacttccgattttgaaggaaaccatcgaa
attcttttctctgaagggctgataaaagccttatttgctacagagacttttgctatggga
ataaacatgccagcaaggacagtgctattcacaagtgcccggaaatatgatgggaaagac
ttccgatggatttcctcaggtgaatacattcagatgtctggccgtgctggccgccgaggc
atggatgatcgaggaatagtcattttaatggtggatgaaaagatgagtccaacgattgga
aaacagcttctaaagggatctgctgatcctttaaacagtgctttccatttgacctacaac
atggtactaaatttgctgcgggtagaagaaattaatccagaatacatgttagaaaaatct
ttttaccagttccagcattatagagctattccaggagtagttgaaaaaattaataatttg
gaacagcagtacaatgagattgaaattccaaatgaagaaaatgtgatcatctattataaa
attagacagcaacttgctaaactgggtaaagaaatagaggaatatattcataagccaaaa
tactgcttgccatttttacaacctggaagattggtaaaagtgaaaaatgaagatgatgat
tttggttggggagtggtggttaacttttccaagaaatcaaatgtgaagcttaattctggt
gaactggatccactctacgttgctgaagtcctcctatactgtagtaaagagagcctgaaa
aattctgcaactgaagccgcaaagcctgcaaagcctgatgaaaaaggggagatgcaggtt
gttcctgtcctggttcatcttctgtcatccatcagcagtgttcgactctatatacccaaa
gacctaaggcctcttgataacagacagagtgtattgaaatcaatacaggaagtgcagaga
cggtttcctgatggagttcctttgctggatcctatcgatgacatgggcattaaagatcca
ggactgaaaaaagtaatccaaaaagtagaagcatttgaacataggatgtattcccaccca
cttcacaatgattctaatttggaaactgtatacaaactttgtgaaagaaaaacacagatt
gccgtagacataaaagcagctaaacgggaattgaaaaaagcaaggactgttttacaaatg
gacgagctcaagtgccgtaaacgtgttctcagaagattgggttttgcaacctcttcagat
gtcatagagatgaaagggcgagttgcttgtgaaatcagcagtgcagatgagcttttgctg
acagaaatgatgttcaatgggcttttcaacgatttatctgcagaacaagcaactgcttta
ttaagctgctttgtatttcaagaaaattcgagtgaaatgcccaaactaactgaacagtta
gcaggccctcttcgtcaaatgcaggaatgtgcaaaaagaattgccaaagtttcagcagaa
gctaaattggaagttgatgaggaaaactatctcagtttattcagaccaaacctgatggat
gtggtatacacatggaccaatggtgctacatttgctcatatatgtaaaatgacagatgtc
ttcgaaggtagcataattcgatgtatgaggaggctagaagaactgcttagacagatgtgc
caagcagcaaaggccattggaaatacagaactggaaaacaaatttgcagaaggaattaca
aaaatcaagagagacattgtgtttgctgcaagtctttatctataa
DBGET
integrated database retrieval system
