Paenibacillus mucilaginosus K02: B2K_34860
Help
Entry
B2K_34860 CDS
T02041
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmw
Paenibacillus mucilaginosus K02
Pathway
pmw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B2K_34860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmw03400
]
B2K_34860
Enzymes [BR:
pmw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B2K_34860
DNA repair and recombination proteins [BR:
pmw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B2K_34860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AFH65827
UniProt:
I0BTY0
LinkDB
All DBs
Position
8202839..8203789
Genome browser
AA seq
316 aa
AA seq
DB search
MEWQPIVPFEPIRTETAPSGDGWVGQIKWDGTRILTYASGGTVRLFNRKGHERTLQYPEL
LDLSSYCTAESVILDGEVIAIADGRPNFQEVMRRDSVRKAQHLALAQKQVPISYMIFDMP
YLDGEWITDKPLRERQRLLQERVRGNATVQLVPSVAGMNDLFGVMKQHKMEGIVCKDLES
KYLIGGKDKRWQKMKIYNDLVAVVGGVTHRAGQVNALMLGLYDAEGRLWYIGHAGTGRFT
QQTWRELTEKVREMTLPERPFVNVPERSKDAVWIKPLLTVKVSYMEWTAGRTLRQPSIQA
LVGAQPADCTFGQLDG
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
ttggaatggcagcccatcgttccgttcgagcccatccgcaccgaaaccgcgccctccggg
gacgggtgggtcgggcagatcaagtgggacggcacccgtattctcacctatgcttccggc
ggcaccgtcaggctcttcaaccgcaagggccatgaacggacgctgcagtaccccgagctg
ctcgacctgtcctcctactgcaccgccgaatcggtcattctggatggagaggtcattgcc
atcgcggacgggcgcccgaacttccaggaggtcatgcggcgcgacagcgtccgcaaggcc
cagcacctggcactggcgcagaagcaggtgcccatctcctacatgatcttcgacatgccg
tatctggacggggaatggatcaccgacaagccgctgagagagcggcagcggctgctgcag
gagcgggtccgcggcaatgccaccgtgcagctggtgccgagtgtcgccggcatgaacgac
ctcttcggcgtaatgaagcagcacaagatggagggcattgtctgcaaggatctcgagagc
aaatatctgatcggcggtaaagacaagcgctggcagaaaatgaagatctacaacgatctg
gtggcggtcgtcggcggggtcacccaccgggcgggccaggtcaacgcgctgatgctcggc
ctgtacgacgccgaaggccggctgtggtatatcggccacgccggtaccgggcggttcacc
cagcagacttggcgggagctcacggagaaggtgcgggagatgaccctgcccgagcgaccg
ttcgtcaacgtgcccgaacggagcaaggatgcggtgtggatcaagcccctgctcacggtc
aaagtgagctatatggaatggaccgccggccggacgctgcgccagccgagcatccaggct
ctggtcggcgcccagccggcggactgcacgttcgggcagctggacggctga
DBGET
integrated database retrieval system