Persephonella marina: PERMA_1086
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Entry
PERMA_1086 CDS
T00870
Name
(GenBank) transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmx
Persephonella marina
Pathway
pmx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PERMA_1086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmx03400
]
PERMA_1086
Enzymes [BR:
pmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PERMA_1086
DNA repair and recombination proteins [BR:
pmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PERMA_1086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UvrB_inter
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACO03201
UniProt:
C0QQC7
LinkDB
All DBs
Position
complement(1037502..1040345)
Genome browser
AA seq
947 aa
AA seq
DB search
MTEKIFGATGSYPEYITASTAKERTVVILPDRKRQKLFLNDLNAYLDFFKRDIKVIELPE
SDDPSDIESQIKRNLFLMYLLKGKDFIGVATEKSLDIKVDKNFSERLIDIKTGSEINRDL
LIHKLIESGYIREEYIENEGEFSVKGGFISVYIPFYGVVQIDLFGDQVESVFLKSKLETR
KSINSVTIFPLYDKPLISRDGIDLQFRDIETVRLFDLIDKIDLITVDIYRQISDNQKIAI
YSNGSNEKLLKKEDIDNSFKINRLPLRQPVVLKDEKTAFIPEDSKKVDLEIQPIKEGDYI
IHEDFGIGIFRGIETREIRGKKYDFMILEYANNEKVYVSYLHFDKIHRYKASGVITLDRI
GGTSWRNLKRKVKNSLKKIAFQLVKLYTERKQIRRDPLVVENDLIEAFERSFPYIETPDQ
LKAIKDIKRDLSSDRPMERVICGDVGFGKTEVAIRAVFINAVNGKQSLVLVPTTVLSYQH
YRNFKERLEPFGVVVENLSRLKSKKETEDIFKRVKEGKIDVIIGTHKALNENLKFKNLGL
LVIDEEHRFGVRAKEKIKALKKDVDTLYMTATPIPRTLNMALSGLKDMSVISTPPEGRVE
TKTFVSIFSEDLIKKAVNFELERGGQVFYLHNRIESIKERADHLSSLFRGARIGIAHGKM
RPKEIEKIILEFIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQLYHLRGRVGR
GNIQAYCYLLLPPQITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVGNILGVEQSGHI
KAVGYEMYLKLLQEAINEEMDRREREPVIQVDFESYIPEDFIPDPQERMNIYMAIAKTTD
IEEIDRLKEYLKNFYDFIPSAFSLYLEISKLKKAAKNSGITKIELKEPVSTIYFDSDFDP
DLIMEIARNFETRGIGTDRIEIFLNKSEINKLTDILSAKKESAGTVL
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaagatttttggtgctactggatcttatccagaatatataacagcaagtaca
gcaaaagaaagaacggttgttatccttcctgacaggaaaaggcagaaacttttcttgaat
gatcttaatgcctatctggatttttttaaaagagatataaaggttattgaactacctgaa
agtgacgatccatcagatatagagtcacagataaagagaaatctttttttgatgtacctt
ttaaaaggtaaagattttataggtgtcgcaactgaaaaaagtcttgatataaaggttgat
aaaaatttttctgagagactgattgatattaaaacaggatctgagataaacagggatctc
ttaatacataaacttattgagtcaggttacataagggaagagtatatagaaaatgaaggt
gagttttccgtaaaaggtggttttatctctgtttatataccattttacggggtagttcag
atagacctttttggcgatcaggttgagtcggtattcttaaaatcaaaacttgagacaagg
aaaagtataaactcagttactatatttcccctttatgataaacctttaattagcagggat
ggaatagatttacagttcagagatattgagactgttaggctttttgatctgatagataaa
attgatcttataactgtggatatatacagacagatctctgataaccagaaaatagctata
tactcaaatggttcaaatgaaaaactgcttaaaaaggaagatatagataacagctttaaa
ataaacaggttacctttaagacagcctgttgtattaaaagatgaaaaaacagcatttata
cctgaggactcaaaaaaggtagaccttgagatacagcctataaaggaaggtgactacata
atacatgaggattttggtattggaatattcaggggtatagaaacaagagagatcagggga
aagaagtatgactttatgatacttgagtatgcaaataatgagaaggtttatgtatcatac
ctccattttgataagatacacaggtataaagcatcaggtgtgataacattagacaggata
ggtggaacatcttggagaaatctgaagagaaaggttaaaaactcacttaaaaagatagca
tttcagcttgtgaagttatatacagagagaaagcagataagaagggatccgttggttgtg
gaaaatgatctgattgaggcttttgaaagatcatttccttacattgagacaccagatcag
cttaaagccataaaggatataaagagggatctttcttcggacagacctatggagagggtt
atatgtggagatgtaggttttggaaaaacggaggtggcaataagagctgtttttataaat
gctgttaacggtaaacagtcacttgttctcgtcccaaccaccgttctttcttatcagcat
tacaggaattttaaggagaggcttgagccttttggtgttgttgttgaaaatctttcaaga
ttaaagtctaaaaaggaaacggaggatatttttaaaagagtaaaagaaggaaagatagat
gtgataataggaacacataaagcgttaaatgaaaatctgaaattcaaaaatctcggactt
ctcgttattgatgaggaacacaggtttggtgtaagagcgaaggaaaagataaaagcttta
aaaaaggatgtagatacactttatatgacggcaacacctataccgagaacactgaatatg
gcattgtctggactgaaggatatgtccgttatcagcacacctcctgaagggagagttgag
acaaaaacctttgtttccattttcagtgaagaccttataaaaaaggctgttaattttgaa
ctggaaaggggaggacaggtcttttatcttcacaacaggatagagagtataaaagagaga
gcagatcatttaagttcattattcaggggagcaaggataggaattgcacacggaaagatg
agacctaaggagatagagaagatcatacttgagtttatagagagaaagatagatatactt
gtatcaacatctatcatagagacaggaatagatataccaacagcaaacacacttataatt
gagagggctgatctttttggtcttgcccagctataccacctgagggggagagttggaagg
gggaatatacaggcttactgttatctactgctccctccacagattacagagaatgcagaa
aaaaggatagatgtgatattgagactgacgagacctggatctggactaaaagtttccata
gaggatatgcagataagaggggttggaaatattcttggcgttgagcagtctggacatata
aaggctgtgggatatgagatgtatctgaagcttctacaggaagctattaatgaggagatg
gacaggagggagagagaacctgttattcaggttgattttgagagttacatacctgaggat
tttatacctgatcctcaggaaaggatgaatatatatatggctatagcaaaaacaacggat
attgaagagattgatagactaaaggagtatcttaaaaacttctatgattttatcccttca
gctttcagtctttaccttgagatctcaaaacttaaaaaagctgcaaagaacagcggaata
acaaagatagagcttaaggaacctgtatctacaatctactttgattcagactttgatcct
gatctgattatggagatagcaagaaattttgaaacaagaggtataggtacagacaggata
gagatattcctgaataaaagtgagataaataagctgacagatatactgtcagcaaaaaag
gaatcagcagggacagttctatga
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