Pseudomonas nunensis: NK667_11890
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Entry
NK667_11890 CDS
T08997
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pnb
Pseudomonas nunensis
Pathway
pnb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NK667_11890 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnb03400
]
NK667_11890 (ligD)
Enzymes [BR:
pnb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NK667_11890 (ligD)
DNA repair and recombination proteins [BR:
pnb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NK667_11890 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UTO17012
LinkDB
All DBs
Position
2774110..2776629
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AA seq
839 aa
AA seq
DB search
MAKTVSEYTRKRNFEITSEPPEAAPAKRGKKTPSALRFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPTQKRLAVHVEDHPISYGTFEGSIPEGQYGAGDVIVWDHGVWQPIGDP
KETYKAGKLKFTLIGEKLAGDWALVRTHLRGSGDKEQWLLIKEKDQQARPISEFDVVAEL
PKSVLSNATVGDKTKKASSKSVKKPKAAKPKPTALPEQFSPQLATLMDKAPAGDWRYEIK
FDGYRILARIDNGKVRLLTRNGHDWTAKLPLQAKALAEMKLDGSWLDGEVVVLNDKGFPD
FQGLQNAFEIGRSVDIIYFLFDAPFLHGVDQREMPVEDRRAALKKALGRKSRQILRFSEA
FTAKHQDIVESACALSLEGVIGKRAGSPYVSRRSPDWIKLKCRLRQEFVIIGYTAPQGSR
SGFGALLLGVYDDKGLLYAGRVGTGFNQANLKLFHGQLQKIERKTSPLDKPLTAAQARGV
HWVEPTLVCEAEFAEWTREGVVRQAAFIAMRTDKPATEIVREQPQSPKASKPVTEKKTSS
KDSTVAGVKITHPERVIDKDSGTQKLELVQFYESISKWILPFLRDRPVSLLRAPEGVEGE
QFFQKHAERLAIPNIKHLDPKIDLGHARLMEIDSVQALIGAAQMGTIELHTWGATTDKIE
TPDLFVLDLDPDPALPWKSMVEATQLTLSVLDEIGLEAFLKTSGGKGMHIIVPLARKDDW
DTVKAFAKAIAQFMAQQLPERISATMGPKNRVGKIFVDYLRNTRGASTVSAYSVRARPGL
PVSVPIARDELTALHGSQEWTVANLLERLEGLKEDPWAGYANRQKITAKMWKQLGAKKP
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaacggtgagtgaatacacacgcaaacgcaacttcgagatcacttcagagccg
cctgaagcagcgccggccaagcgcggcaagaaaacgccttcggccttgcgtttcgtgatc
cagaagcatgatgcgcgcaatttgcattacgactttcgcctggaactcgatggcaccctg
aaaagctgggccgtgcccaaaggcccgagcctggacccgacgcaaaagcgtctggcggtg
catgtcgaggaccatccgatcagttacggcaccttcgagggcagcatccccgagggtcag
tacggcgccggggatgtgattgtctgggatcacggtgtctggcaaccgatcggtgacccg
aaagaaacctacaaggccggcaaactgaaattcaccctgatcggtgaaaagctcgccggt
gactgggcattggtgcgtacccatctgcgcggcagtggcgacaaggagcaatggttgctg
atcaaggaaaaggatcaacaagcgcggccgatcagcgagtttgacgtggtcgccgagttg
cccaaaagcgtattgagcaatgcgaccgtgggcgacaaaaccaaaaaggccagtagcaaa
tccgtcaaaaagcccaaagcagccaaacccaaacccaccgccctgcccgaacaattcagc
ccgcaactggccacgctgatggacaaggcaccggccggcgattggcgctatgaaatcaag
ttcgacggctaccggatcctcgcccggatcgacaatggcaaggtgcgactgctgacccgc
aatggccacgactggacggccaaactgcccctgcaggccaaggccctggccgagatgaaa
ctcgacggcagttggctcgatggcgaagtggtggtgctcaacgacaaaggcttcccggac
ttccagggattgcagaacgcgttcgaaatcggccgctccgtggacatcatttatttcctg
ttcgacgcaccgttcctgcatggcgtcgatcagcgtgagatgccggtagaagaccgccgc
gcggcgctgaaaaaagccctgggtcgcaagtcccggcaaatcctgcgcttctccgaggcc
tttaccgccaaacatcaagacatcgtagagagtgcctgtgccttgtcactggaaggcgtc
atcggcaaacgcgctggcagcccttacgtgtcacgccgcagtccggactggatcaagctc
aaatgccgcttgcgtcaggaattcgtgatcatcggctatacggcgccgcagggttcgcgc
agtggtttcggcgccctgctgctgggggtttacgacgataagggactgctctatgcaggg
cgcgttggcaccgggttcaatcaggccaacctcaagttgtttcatggccaattgcagaag
atcgagcgcaagacctcaccgttggacaaaccgttgaccgccgctcaggcccggggtgtg
cactgggtcgagccgacgctggtgtgcgaagccgagtttgccgagtggacccgcgaaggt
gtggtccggcaagcggcgtttatcgccatgcgcaccgacaaaccggcgacggagattgtg
cgtgaacagccgcagtcccccaaggcgagcaaacccgtgaccgagaagaaaaccagcagc
aaggacagcaccgtcgccggggtcaagatcacgcaccccgagcgtgtcatcgacaaggat
agcggcacgcagaaactcgaattggtgcagttctacgaaagcatcagcaaatggatcctg
ccgtttctgcgcgaccggccggtgtcgttgttgcgggcgccggaaggcgtcgaaggcgaa
cagttcttccagaaacacgccgagcgcctggcgatccccaatatcaagcacctggacccg
aagatcgaccttggccacgcgcgactgatggaaatcgactccgtccaggcactgatcggc
gcggcgcaaatgggcaccatcgagctgcatacctggggcgcgaccacggacaagattgaa
accccggacttgttcgtcctcgacctcgacccagatccggcgctcccatggaaaagcatg
gttgaggccacgcaactgaccctgtcggtgctggatgaaatcggcctggaggcgttcttg
aaaaccagcggtggcaaaggcatgcacatcatcgtgccgctggcgcgcaaggatgactgg
gacacggtcaaagcgttcgccaaagccatcgcgcagtttatggcgcagcaactgccggag
cggatcagcgcgaccatgggcccgaaaaaccgggtcggcaagattttcgtcgattacctg
cgcaacacccgtggggccagtacggtgtcggcgtattcggtgcgggcgcggccggggtta
ccggtatcggtgccgattgcgcgggatgagttgacggcgctgcatggttcgcaggaatgg
acggtggccaatttgctggagcgactggagggattgaaagaggatccgtgggcggggtat
gcgaatcggcagaagattacggcgaagatgtggaagcagttaggggccaagaagccttag
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