Polynucleobacter necessarius: Pnec_0912
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Entry
Pnec_0912 CDS
T00683
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pnec_0912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pne03400
]
Pnec_0912
Enzymes [BR:
pne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pnec_0912
DNA repair and recombination proteins [BR:
pne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pnec_0912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
DUF4217
AroM
Motif
Other DBs
NCBI-ProteinID:
ACB44110
UniProt:
B1XUT3
LinkDB
All DBs
Position
786094..789639
Genome browser
AA seq
1181 aa
AA seq
DB search
MSDALNLVPPIPAPRAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQR
LLEEIPAFAPQLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTA
LQRLGPPNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFP
MGSNLPYRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWRE
VFEGDPSRCSIYKDASLGIPSAGIESYLPLFFEENSSLFDYLPRSGDPVWLVSIGDVEET
IKGFWKDTLSRYEFLKHDLDRPILPPKELFLDVDEFFSTSKPYARLSLENEAVEKNEFFA
VPDISVHRRDADPISRLRNVVASENVRVLICSDSAGRKESIRQLFDESNSVASVDGKSLY
SLKPEGFDSIAEFIKSESLFGLVTAPLFNGFSWPSENLIVITEAELFTTTTRQRRKGKAN
ENADSDMLFKDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQA
TLYVPVQQLQMVTRYAGSDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARAI
RKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEV
ALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVALA
AIAKGEADIIIGTHKLLSKETQFANLGLVIADEEHRFGVRQKDALKALRAEVDILTLTAT
PIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLHN
EVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDV
PTANTIIMHRADKFGLAQLHQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAME
ELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKESDLLSP
LQATTDVNLGVPALLPEDYCPDVHERLSLYKRFAGTHDFSELMGLREELVDRFGDLPDQA
RSFYETHRLRLEMAGFGIKKIDATPVSIQIQFIPNPPIDPMKIIQLIQSSKHIQLNGQDK
LKVLPQKDREFERLEQRLDAIRQVLRRLNESAVLSTVKVGQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgcattaaatctggtaccccccatacccgctccccgggctgggcggcgcttt
accttttcgggactgattgggtcatctgatgcagccctaattgcacaaaccgcccttcgc
tatcgggacaaattctcggtaatggtaattttctgcgctcaagcacaggaagcgcagcgc
ctactggaagagattcctgcttttgcaccacaactgaaaaccagactcctacccgattgg
gaaattcttccctatgaccacttttcacctcatcaagatttagtttctgagaggcttgcc
actctttatgagcttctcaatggaagttgtaacattgttttagtccccgttacaacagct
ctacagagattggggcccccaaactttttggcaagccacacctttttctttaggcaaggt
gacaaacttaatgaggcggctttaaagctacaattacaacaggcaggctatgaccctgtg
agcgctgtgatgcgcccaggtgaatatagtattcggggggggttgtttgatttattcccc
atgggatcaaatctaccttatcgattggatttatttggtgatgagatagaacagattcgc
gcctttaatccagatacccagcgcagcctttaccccgttaaggaggttcgactgcttccg
ggccatgagtttccatttgatgatacctctcgtacgtcattcagagggcgctggagagag
gtatttgaaggcgacccaagtcgctgctctatctataaggatgctagcctaggaattcca
agtgccggcattgaatcgtaccttccacttttctttgaagaaaattccagcctatttgat
tacctcccgagatcaggcgatcccgtctggcttgtcagcattggtgatgttgaagaaacc
attaagggcttttggaaggacacactttcacgttatgagtttctcaaacatgatttagac
cgacccattcttccgcctaaggaattatttttagatgttgatgaattcttttcaacctcc
aaaccttacgctcgtttatcgcttgaaaatgaagctgttgagaagaatgaatttttcgcg
gttcccgatatttctgttcatcgtcgcgatgcagaccccataagtcgtttaagaaatgta
gttgcctctgaaaatgtacgtgtcctcatttgcagtgatagcgctggcagaaaagaatct
attcgacagctatttgatgaaagtaattctgtagctagcgtagatggcaagtctctttat
tcgctaaagccagaaggattcgatagtatcgcggaatttattaagagtgaatcactgttt
ggcttggtaaccgcaccactctttaatggattttcatggccctcagaaaatcttattgtt
attaccgaagcggaattatttaccactacaacaagacagcgacgcaaaggcaaagcaaat
gagaatgccgattcagacatgctgtttaaggatctatccgaactgaaaatcggcgatcca
gtggtacacgcagagcatggcattgggcgatatcaaggtttagtacttctcaatttggca
ccaccaaaagaagaacctagttttgaagagtttcttcatcttcaatacgctggtcaagcc
accttatacgtccccgttcagcagctgcaaatggttacgcgctatgcgggctcagaccct
gattccgccccactccatcaactaggctcaggacaatggggcaaggccaaacgcaaagcc
gcacaacaaattcgagatacggctgctgagttattggggctgtatgcagctagagcaatt
cgcaaaggtcatgcctttgaattctctgcacatgattatgctgcctttgcagaaagtttt
ggctttgaagaaacgcctgatcaggccaatgcgattgccgccgtgattggtgacatgaca
agcggtacacccatggatcgcttagtgtgtggtgatgtgggttttggaaagaccgaagta
gccttgcgcgctagttttgttgcggtcatgggcggtaaacaggtcgctattttagcgcct
accaccctacttgctgaacaacatgttgccacctggaaagatcggtttgcagattggccc
gttcgtattgttgagctctcacgttttaagacaaccaaagagattaacgttgctcttgca
gcaattgctaagggtgaagccgacattattattggcacacataagctactttctaaagaa
actcaatttgctaatttaggtttagtcattgctgatgaagagcatcgatttggagtgcgt
caaaaggatgctctgaaggccctgcgggctgaggtagatattctgacgctaacagccaca
ccaataccacgaaccctgggtatggctatggaaggcttgcgagagttctcgattattgcc
acagcaccacagaagcgtttagccattaagacttttgttcgacgcgagggtgatgatgta
atacgtgaagcggtattacgtgaaattaaacgtggtggccaagtctatttcctgcataac
gaagttgaaacaattcagaatcgtaaacatgcattacaggaactcatccccgaagcccgg
attagcgtagctcacggacaaatgcacgaacgtgaactcgaatcagttatgcgcgagttc
gtaacgcaacgcaccaatatcttgttgtgcaccaccatcattgaaactggtattgacgtt
ccaacggccaataccatcatcatgcatcgtgccgataagtttggcttagcccaattacat
caattgcgtggtcgcgtaggtcgttcacatcaccgggcatatgcctatttgttggtgccc
aattcagaggccttaagcaaacaagctcagttacgcctcaacgccattcaagcaatggaa
gaattgggctctgggttctatttggcaatgcatgacctagaaattcgtggggctggtgaa
gttttgggtgataaacaatcgggtgaaattcatgaaattggctttcagctttataccgag
atgcttaatcgcgctgttaaatccttgcgtagtggcaaggagtctgatctgctttcacct
ttgcaggcaactaccgatgtcaatcttggtgttcccgccctgctgccagaagattactgt
cccgacgtgcatgagcgcctatcgctttataaacgctttgccggcacgcatgatttctca
gaattaatgggcttgcgtgaagagctggtggatcgttttggagaccttccagatcaagcc
aggtcattttatgaaactcaccgcctgcgactagagatggctgggtttggcattaaaaag
attgatgcaacgcctgtttccatccagattcaatttataccgaacccaccaattgatcca
atgaaaattattcaactcattcaatcttcaaagcatattcaactaaatggccaggataaa
ttaaaagtactgccccagaaagatcgagaatttgagaggctagagcaacgtctggacgcc
ataaggcaagtcttgcggcgcctgaatgaatccgccgtattgagcacagtaaaagtaggc
caataa
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