Candidatus Protochlamydia naegleriophila: PNK_2068
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Entry
PNK_2068 CDS
T04212
Name
(GenBank) putative transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PNK_2068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_2068
Enzymes [BR:
pnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PNK_2068
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PNK_2068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CUI17672
UniProt:
A0A0U5JCS8
LinkDB
All DBs
Position
cPNK:2415353..2418646
Genome browser
AA seq
1097 aa
AA seq
DB search
MVLQSILKNERLLALEQALQHSNDIILVEELWNAPKSLVAAVAQQTTGKHILILTGASQE
ESRLFHDFAFFTNRPVVDFPSWETLPSENIPPSPDIVGERYKLLKEIQTSSEPHIILTSL
QACLQRLISPASFQDLYLTLKPGQSPTFEGLIHKLLQMGYQRKFIASDKGEFAVRGGIID
IFPVSSPDPYRLEFWGDDLESMRIYDPVGQKSVKTVEKIDIAPAVELELLNQSAEQASIL
DYLGPQTIVVFDDLLALEDRYASLISLGAHNKFFSSIEDFLNQLASFQKLFWSQKPIEEL
SEVRQIDAKSQGYYSQKTPFHQLSFHMFNREWNVKRWRHPFNTIGDYLFSQEEGEPSSDE
ILFRLSSLPHDTCQLLFLCASELEESNLHERLKAASIHLPKHTSYQIGYLSSGFVVQDQD
IVVLPLAELTHRYKIRRQKLRSTYHTSPSETYDLTPGEMVVHLNNGIGRYLGMEKRPNHL
GIPSEFFTIEYAENAKLYVPFNQAHFITKYIGANEEIPKLHTLGSTRWKKTKENTERAIL
GYASELLKNYAERAIKEGFTYPEDTADFQTFEDEFPFVETEDQLAAIESIKQDMMSNKAM
DRLICGDVGYGKTEVAMRAAFKAVTDGGKQVAVLVPTTVLAMQHFDNFIDRMANFPLNIG
VLSRFRSPKQIRETLEGVANGSIDIVIGTHRIISEDVKFKDLGLVIIDEEQRFGVKAKEH
LKKVKVGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPIKTIITEPTDQTIQNA
LLRELSRDGQAFVIHNRVESIHTVSARIKGLLPQAKILVAHGQMHADEIDATFHAFKSGQ
ADILIATTIVENGVDIPNANTILIDRADHFGLAALYQLRGRVGRWNRRAYAYFLVPNLRV
LPELSRKRLQALAEASGYGGGMKVAMRDLEIRGAGDILGLEQSGHVSSIGFHLYCKMLKR
TIQALQGKIPSIISDIKIEFAVDARLPEEYVNEVSLRMEIYQRLGEAFSFEEVDAIWAEV
QDRFGAAPEPALWLYHLTRIRVFASRQGFTLLKQEKLSLTIEKHKGKDTLVRKILMPKFK
SPQELEKKVLAELEKTN
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggttcttcaaagcattttaaaaaacgagcgcctcttggcactcgaacaagcccttcaa
cattccaacgacattatcttggtcgaagaattatggaacgcacctaaatctttagttgca
gctgttgcccagcaaaccacgggcaagcatattttaattctgactggagcgagccaggaa
gagagccgtctttttcacgattttgctttctttaccaatcgtccagtcgtcgactttccc
tcatgggaaacgctcccctctgaaaacattccgccaagtcctgacatcgtgggggagcgc
tataagctattgaaagagattcaaacgtcttccgagccccacatcattttgacaagcttg
caagcatgcttgcaaaggctcatttcgcctgcttcttttcaagacttatacctaacgctc
aagcccggtcaaagcccaacttttgaaggattgattcacaaacttttgcagatgggatat
caacgcaagtttatcgcctcggacaagggggaatttgccgtgcgcggggggatcatcgat
atcttccctgtctcctcgcccgatccttaccgcctggaattttggggggatgatctggaa
tcgatgcgcatttacgatccggtagggcaaaagtcggtcaaaacggtcgaaaagatcgat
attgcacccgctgtagagttagagcttctcaatcaatcggccgagcaagcctccattttg
gactatcttgggcctcaaacgatagtggttttcgacgatcttctggctttagaagaccgc
tatgcttctttaattagtttaggggctcataataagtttttcagttctattgaagacttt
ctaaatcagctagcctcttttcaaaagcttttctggtctcaaaagccgatcgaagagctc
agtgaagtgcggcaaatcgatgccaaaagccaaggttattattcgcaaaaaacacctttt
catcagcttagcttccacatgtttaaccgcgaatggaacgttaagcgttggcgccatccc
tttaacacaattggagactatctcttctcacaagaagaaggggagccaagcagtgatgaa
attctttttcgcctttcttccctgccccatgatacctgtcagctcctctttttatgcgca
agcgaactggaagaatccaacttgcatgagcgtctcaaagcagcctctattcatttgccc
aagcacacctcttaccaaatcggctatttatcgagcggctttgttgttcaagatcaagac
atcgtggtcctgccgctggctgagctgactcaccgttataaaatccgcaggcaaaaactt
cgcagcacctaccacacctcgccttctgaaacgtatgatctcactccaggtgaaatggtt
gtccacctcaataatgggattggccgctatttggggatggaaaaaaggcccaatcattta
ggcattccaagcgaattttttacgatcgaatatgccgaaaatgccaagctttatgtccct
ttcaaccaggctcacttcatcaccaaatacattggagccaatgaagaaatacccaagctc
cacactcttggaagcactcgctggaaaaagactaaagaaaacactgaaagagccattttg
ggctacgcctctgagcttctcaaaaactatgcagagagagctatcaaagaaggctttact
tatccagaagacacagccgacttccaaacttttgaggatgaattcccttttgtagaaaca
gaagatcaattggcagccatagaaagcattaagcaagatatgatgtcaaataaggccatg
gatcggctcatctgcggcgatgtaggctatggcaagacagaagttgccatgcgcgccgct
tttaaagcggtaacggatggaggcaaacaagttgctgtcttagtccccacaaccgttttg
gccatgcagcacttcgacaactttatcgatcggatggcaaattttccgctcaatattggc
gttctatcccgatttaggtccccaaagcaaatcagggaaacgctagaaggggttgccaac
ggctctatcgacattgtcattggtacccaccgcatcatcagcgaggacgtcaaatttaaa
gatttaggccttgtcatcatcgacgaagagcagcgctttggagtcaaagccaaggaacat
ctcaaaaaagtcaaggttggcgtcgactgcctgacactatctgctacgcctattccgcgt
acgctttacatgtcgctgattggtgcaagagacatgtcggtcatcaatacaccgcctcag
gaccgccttccaatcaagacgatcatcaccgaaccgaccgatcagaccattcaaaatgcg
ctcttgcgggagctttcccgtgacggccaagcgttcgtcatccataatagggtcgaatcg
attcataccgtgagcgcacgcattaaaggacttcttccgcaagcaaagattttagtcgct
catgggcagatgcatgctgatgaaattgatgccacttttcatgcctttaaaagcggacag
gccgatattttaatcgccaccaccattgtggaaaatggagtcgacattcccaatgccaac
accattttaatcgatagggccgaccacttcgggctggcagcactctatcaattaagaggg
cgtgtcggcagatggaatcgaagagcctatgcctactttctcgtccccaatttaagggtc
ttgccagagcttagccgcaaacgtctgcaagccttggcagaagcaagcggctatggtgga
ggaatgaaagttgccatgcgcgatttggagattagaggcgctggagatattttaggattg
gaacagtcggggcatgtgtcatctattggtttccacctctattgcaaaatgctcaagcga
accattcaagccttgcaaggcaagattccaagcatcatcagcgatattaaaattgaattt
gccgtcgacgcacgcctgccagaagagtatgtcaatgaggtaagcctccgaatggaaatc
taccaacgccttggcgaagctttttcattcgaagaggtcgatgccatttgggccgaagta
caggatcgctttggcgcggctcctgaacctgccctttggctctatcatctcacacgaatc
agagtctttgcctcacgccaaggatttactctgctcaaacaggaaaagctctctttgacg
attgaaaagcataaaggcaaagatactttggtgcgcaaaatcctcatgcccaaatttaaa
tcaccacaagagctagagaaaaaagtattggcggaactcgaaaaaacgaattag
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