Candidatus Protochlamydia naegleriophila: PNK_2195
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Entry
PNK_2195 CDS
T04212
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PNK_2195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnl03400
]
PNK_2195
Enzymes [BR:
pnl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PNK_2195
DNA repair and recombination proteins [BR:
pnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PNK_2195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
GH3
Motif
Other DBs
NCBI-ProteinID:
CUI17796
UniProt:
A0A0U5JG24
LinkDB
All DBs
Position
cPNK:2563342..2565213
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AA seq
623 aa
AA seq
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MPEAIKPMLATLVDEPFDNKDWIFEIKWDGYRTLAYIQKGDVSLLSRNNQSFNTRFSSLV
KALRTIEMDAVLDGEIVVLNEDKKPSFQLMQNYQRNQKGMLVYYVFDLLYLQGYDLRDMP
LLQRKELLKKLLPKNSQILFCDHVTGKGKAFFQSVLKQGFEGIIAKNAQSVYASGRSRNW
LKIKTHQRQEAIICGFTAPRKSRKHFGSLILGVYDGGKLTYVGHTGSGFGEEKLKELYER
LQKLAQDKCPFENVPKTNMNPTWAKPKLVCEISFAEWTNDKIMRQAIFIGIREDKSPTEV
AFEKEVPTKEVLAESEDHPKVPSLKKKSSPKPLLHLKLTHLDKLYWPQEGYTKGDLIEYY
REVSSLILPYLKDRPETLRRYPNGIGETSFYQKELFHAPSWIRTEPIHHEERKIRYLVID
DEESLLYAVNLGCIDLNPFNSRVQSLHQPDYLIIDLDPEDISFDHVLEVAQGVHHVLESW
NVPNLCKTSGATGLHIYIPLGARYNYDEARQFGNLIAHVVHQALPKITSIERTPRNRQKK
VYLDYLQNRFGQTVAAPYSVRPKPYAPVSTPLKWSEVKAGLQPTDFTIKNAVERFKKLGD
LFQPILGKGIDLKKILEKVATGL
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgccggaagcgattaaacctatgctggccaccctagtcgatgagccttttgacaataaa
gattggatttttgaaattaaatgggatggttataggacgcttgcctacattcaaaaggga
gacgtttcactcttatcgcgcaacaaccaatcctttaatacccgcttctcctcgcttgtc
aaggcattaagaaccatcgaaatggatgccgttctggatggcgagatcgtcgtattaaac
gaagataaaaagccaagctttcagctcatgcaaaattaccagcgcaatcaaaaaggaatg
ctcgtctattacgtattcgatctcctctatctgcaaggctatgacttgcgagatatgccc
ctcctccagagaaaagagctgcttaaaaagcttctccccaaaaattctcagatccttttt
tgcgatcatgtcacaggaaaaggcaaagcgtttttccaatcggtattgaagcaaggcttt
gaaggcatcattgccaaaaatgcgcaaagtgtttatgcatcgggacgcagccgcaattgg
ctcaaaatcaagacacatcaacgccaagaagctatcatctgcggttttacggccccaaga
aagtcgcgcaagcattttgggtctctcatcttaggtgtctatgacggaggcaagctaacg
tacgttggccacacgggcagcggttttggagaagagaagttaaaagagctctatgaacgc
cttcaaaaacttgcacaagacaagtgcccttttgaaaacgttcctaaaacgaacatgaat
ccaacttgggccaagcccaaactcgtctgtgaaataagctttgccgaatggacaaacgac
aagatcatgcgtcaagctatttttattggcattagagaagataaaagccctacagaagtc
gcattcgaaaaggaagtcccgacaaaagaggtactagcggagtccgaggaccatccaaaa
gtcccttcgttaaagaagaaaagcagtcctaagccgctactccatctcaaattaacccac
ctcgacaaactctattggcctcaagagggatacaccaagggagatttaattgagtattac
cgcgaggtttcttccctcattttaccttatctaaaagaccgccccgaaaccttgcggcgc
tatccaaatgggatcggagaaacaagtttttatcaaaaagaactgttccatgctccttct
tggatacgaactgaacccattcaccacgaagagcgcaagatccgctaccttgtcatcgat
gatgaagagagcctcttatacgcggtcaatttaggatgcattgatttaaatccctttaat
tctcgcgtacaatcgctgcatcaaccagactacctgattatcgatctggatccagaagat
atttctttcgatcacgttttggaagtagcccaaggtgtacatcacgtcttggagagctgg
aatgttcccaacctttgcaaaacgtctggcgcaacgggccttcatatctacattccatta
ggagcccgctataattacgacgaagcgcgccaatttggcaatttgattgctcacgttgtc
caccaagcgctgccaaaaatcacttccattgagcgcactccgcgcaacaggcaaaaaaaa
gtttatttagactacttgcagaaccgcttcggccaaacagttgccgctccttactctgta
agaccaaaaccctatgcccctgtctctacccctttaaaatggagcgaagtcaaagccggt
ttacaaccgacagacttcaccatcaaaaatgccgtcgaacgattcaagaagctgggtgat
ttatttcaaccgattcttggcaaaggaatcgatcttaaaaagatcctggaaaaggttgca
accggtctttaa
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