Halopseudomonas nanhaiensis: KEM63_01465
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Entry
KEM63_01465 CDS
T07673
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pnn
Halopseudomonas nanhaiensis
Pathway
pnn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KEM63_01465 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnn03400
]
KEM63_01465 (ligD)
Enzymes [BR:
pnn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KEM63_01465 (ligD)
DNA repair and recombination proteins [BR:
pnn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KEM63_01465 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
UAW98681
LinkDB
All DBs
Position
318564..321164
Genome browser
AA seq
866 aa
AA seq
DB search
MSQPLEEYNRKRDFAATPEPSGEARRRRGGKRTAAGKALQFCVQKHDATRLHYDFRLELD
GTLKSWAIPKGPSLDPRSRRLAVHVEDHPLDYASFEGNIPAGHYGAGDVIVWDRGVWIPQ
GDAQADYEKGKLKFELQGEKLSGIWNLVRTRMDGKKEQWFLIKSNDEVARPEREYDIVAE
QPHSVLSDRTIVEKKRGKAAAAKADKGASPKALKKTPAAPRQAKSSGTASLSGAEAAPLP
ESIKPQLATLVETIPDGEWRYEIKFDGYRIMARIEDGDVRLLTRNGHDWTAKMPRQAEAL
ASLALESAWLDGEVVVTDENGLPDFQALQNAFEEGKSGAIVYYVFDMPFLNGSDLRKVPL
EERRAALAEVLQRSEDDILRFSEDFDESPDAMLNSACQMKMEGLIGKRSGSSYVSRRSND
WIKLKCKHRQEFVIVGFSEPKGSRSAFGALLLGLHDADSGELRYAGKVGTGFNEASLRSI
HRKLKPLEVDKPALANPPKGVDARGVHWLKPKLLAEVSYAEMTKDGSVRHAVFQGLRDDK
PATDIVAEKPAAAPQGGARGGSAKQTGKAAGNAGPNLRITHPDRVIDASSGTTKLQLAEY
YARVAGWILPHLQNRPVALVRAPEGLAGELFFQKNADRLAIPGIETMGKEYSGQPVMMVN
NAEALIGAVQMGTIEFHTWNATSADLERPDRFILDLDPDPALPWKAMVEATQLTLAVLDE
LGLQSFAKTSGGKGIHLVVPLTPSAGWSEVKSFSQAIVKHMAKLLPERFSAVSGPKNRVG
RIFIDYLRNSQGATTIGPFAARTREGMPVSVPIFREEITEIPSANLWTVHNLHERLEELD
DDPWAGYAEVEQTITAEMRERLGLKR
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgagccagccactggaagagtacaaccgcaagcgagatttcgccgccacgccggagcca
tccggcgaagccaggcgccgccgtggcggcaagcgcaccgccgccggcaaggcgctgcaa
ttctgcgtgcagaagcatgacgccacgcgcctgcactacgacttccgccttgagctcgac
gggacgctgaagagctgggcgatacccaaggggccaagcctcgatccccggtcccgccgg
ctggccgttcacgtggaggaccacccgctggattacgccagtttcgaaggcaacatacct
gctggtcactacggagcgggagatgtgatcgtctgggaccgtggcgtatggattccgcag
ggcgatgcacaggccgactacgagaaaggcaagctcaaattcgagctgcagggcgagaag
ctgtcgggcatctggaatctggtgcgcacccgcatggatgggaagaaggagcagtggttt
ctgatcaagtccaacgatgaggtggcccggccggagcgcgagtacgacatcgtggccgaa
cagccgcacagcgtgctcagcgatcgcaccatcgtcgagaagaagcgcggcaaggctgct
gcagcaaaggccgacaagggcgctagcccaaaggcgctgaagaaaaccccagccgccccc
cgacaggcgaaatcctctgggacggcttcgctgtccggtgccgaagctgcgccgctgccc
gagtcgatcaagccgcaactggcgactctggtcgaaacgattccggacggcgaatggcgc
tacgagatcaagttcgacggttaccgcatcatggccaggatcgaggacggcgacgtgcgt
ttgctgacccgcaatggtcatgactggacggcgaaaatgccccgtcaggccgaggcgctg
gcgagcctggcgctggagtcggcctggctcgatggtgaggtggtggtcaccgacgaaaac
ggtctgccggatttccaggcgctgcagaatgccttcgaggaaggcaagagcggcgccatc
gtctactacgtgttcgatatgccgtttctgaacggcagtgatctgcgcaaggtacccctg
gaggagcgccgcgctgcgctggcagaggtgctgcagcgcagcgaagacgacattctcaga
ttttccgaagacttcgacgaatcgcccgatgcgatgctcaacagcgcctgccagatgaag
atggaagggctgatcggcaagcgctcgggcagcagctacgtgtcgcggcgcagcaacgac
tggatcaagctcaagtgcaagcaccggcaggaattcgtgatcgtcggcttcagcgaaccc
aagggcagccgcagcgcattcggtgccttgctgctgggtctgcacgatgccgacagtggc
gagctgcgctacgccggcaaagtcggcacaggcttcaatgaagcgagcctgcgcagcatc
cacaggaaactcaaaccgctggaagtcgacaagccggcacttgccaatccgccaaaggga
gttgatgcgcgaggcgttcattggctgaagccgaagctgctggcggaagtctcgtacgcc
gagatgaccaaggatggcagtgtgcggcacgctgtattccaggggctgcgagacgacaag
ccggcgacggatatcgtcgccgaaaagccagccgcggcgccgcagggcggtgcccggggc
gggtccgccaagcagaccggcaaggcggctggcaacgccggaccgaatctgcgcatcacc
caccccgaccgcgtgatcgatgccagtagcgggaccaccaagctgcagctggcggagtac
tacgcccgggtcgccggctggatactgccccatctgcagaatcgccctgtagcgctggtc
cgcgcccccgagggcctcgctggcgagctgttcttccagaagaacgccgaccgtctggcc
atccccggcatcgaaaccatgggcaaggaatattccggccagccggtgatgatggtcaac
aacgctgaggcgctgatcggcgcggtgcagatgggcaccatcgaattccacacctggaat
gcaacgtccgcggatctggaacggcccgatcgcttcatcctcgaccttgatcccgatccg
gcgctgccgtggaaggcgatggtcgaagcgacccagctgacactggcagtgctcgacgag
ctggggctgcagtcgtttgccaagaccagcggcggcaagggtatccacctggtggtcccg
ctcaccccgtctgccggatggagcgaggtgaaaagcttcagccaggccatcgtcaaacat
atggccaagctgcttcccgaacggttttctgcggtgtcagggccgaagaatcgcgtcgga
cgcatcttcatcgactatctgcgcaacagccagggtgccaccaccatcggccccttcgcc
gcgcgcacccgtgaaggcatgccggtatcggtgcccatcttccgcgaggagattaccgag
atcccgagcgccaacctctggactgtccataacctgcacgaacggctcgaggagctggat
gatgatccctgggccggctatgccgaagttgagcagaccattactgccgagatgcgcgaa
cgtctcggtttgaaacgttga
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