KEGG   Halopseudomonas nanhaiensis: KEM63_01465
Entry
KEM63_01465       CDS       T07673                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pnn  Halopseudomonas nanhaiensis
Pathway
pnn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pnn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KEM63_01465 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnn03400]
    KEM63_01465 (ligD)
Enzymes [BR:pnn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KEM63_01465 (ligD)
DNA repair and recombination proteins [BR:pnn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KEM63_01465 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme Tudor_3
Other DBs
NCBI-ProteinID: UAW98681
LinkDB
Position
318564..321164
AA seq 866 aa
MSQPLEEYNRKRDFAATPEPSGEARRRRGGKRTAAGKALQFCVQKHDATRLHYDFRLELD
GTLKSWAIPKGPSLDPRSRRLAVHVEDHPLDYASFEGNIPAGHYGAGDVIVWDRGVWIPQ
GDAQADYEKGKLKFELQGEKLSGIWNLVRTRMDGKKEQWFLIKSNDEVARPEREYDIVAE
QPHSVLSDRTIVEKKRGKAAAAKADKGASPKALKKTPAAPRQAKSSGTASLSGAEAAPLP
ESIKPQLATLVETIPDGEWRYEIKFDGYRIMARIEDGDVRLLTRNGHDWTAKMPRQAEAL
ASLALESAWLDGEVVVTDENGLPDFQALQNAFEEGKSGAIVYYVFDMPFLNGSDLRKVPL
EERRAALAEVLQRSEDDILRFSEDFDESPDAMLNSACQMKMEGLIGKRSGSSYVSRRSND
WIKLKCKHRQEFVIVGFSEPKGSRSAFGALLLGLHDADSGELRYAGKVGTGFNEASLRSI
HRKLKPLEVDKPALANPPKGVDARGVHWLKPKLLAEVSYAEMTKDGSVRHAVFQGLRDDK
PATDIVAEKPAAAPQGGARGGSAKQTGKAAGNAGPNLRITHPDRVIDASSGTTKLQLAEY
YARVAGWILPHLQNRPVALVRAPEGLAGELFFQKNADRLAIPGIETMGKEYSGQPVMMVN
NAEALIGAVQMGTIEFHTWNATSADLERPDRFILDLDPDPALPWKAMVEATQLTLAVLDE
LGLQSFAKTSGGKGIHLVVPLTPSAGWSEVKSFSQAIVKHMAKLLPERFSAVSGPKNRVG
RIFIDYLRNSQGATTIGPFAARTREGMPVSVPIFREEITEIPSANLWTVHNLHERLEELD
DDPWAGYAEVEQTITAEMRERLGLKR
NT seq 2601 nt   +upstreamnt  +downstreamnt
atgagccagccactggaagagtacaaccgcaagcgagatttcgccgccacgccggagcca
tccggcgaagccaggcgccgccgtggcggcaagcgcaccgccgccggcaaggcgctgcaa
ttctgcgtgcagaagcatgacgccacgcgcctgcactacgacttccgccttgagctcgac
gggacgctgaagagctgggcgatacccaaggggccaagcctcgatccccggtcccgccgg
ctggccgttcacgtggaggaccacccgctggattacgccagtttcgaaggcaacatacct
gctggtcactacggagcgggagatgtgatcgtctgggaccgtggcgtatggattccgcag
ggcgatgcacaggccgactacgagaaaggcaagctcaaattcgagctgcagggcgagaag
ctgtcgggcatctggaatctggtgcgcacccgcatggatgggaagaaggagcagtggttt
ctgatcaagtccaacgatgaggtggcccggccggagcgcgagtacgacatcgtggccgaa
cagccgcacagcgtgctcagcgatcgcaccatcgtcgagaagaagcgcggcaaggctgct
gcagcaaaggccgacaagggcgctagcccaaaggcgctgaagaaaaccccagccgccccc
cgacaggcgaaatcctctgggacggcttcgctgtccggtgccgaagctgcgccgctgccc
gagtcgatcaagccgcaactggcgactctggtcgaaacgattccggacggcgaatggcgc
tacgagatcaagttcgacggttaccgcatcatggccaggatcgaggacggcgacgtgcgt
ttgctgacccgcaatggtcatgactggacggcgaaaatgccccgtcaggccgaggcgctg
gcgagcctggcgctggagtcggcctggctcgatggtgaggtggtggtcaccgacgaaaac
ggtctgccggatttccaggcgctgcagaatgccttcgaggaaggcaagagcggcgccatc
gtctactacgtgttcgatatgccgtttctgaacggcagtgatctgcgcaaggtacccctg
gaggagcgccgcgctgcgctggcagaggtgctgcagcgcagcgaagacgacattctcaga
ttttccgaagacttcgacgaatcgcccgatgcgatgctcaacagcgcctgccagatgaag
atggaagggctgatcggcaagcgctcgggcagcagctacgtgtcgcggcgcagcaacgac
tggatcaagctcaagtgcaagcaccggcaggaattcgtgatcgtcggcttcagcgaaccc
aagggcagccgcagcgcattcggtgccttgctgctgggtctgcacgatgccgacagtggc
gagctgcgctacgccggcaaagtcggcacaggcttcaatgaagcgagcctgcgcagcatc
cacaggaaactcaaaccgctggaagtcgacaagccggcacttgccaatccgccaaaggga
gttgatgcgcgaggcgttcattggctgaagccgaagctgctggcggaagtctcgtacgcc
gagatgaccaaggatggcagtgtgcggcacgctgtattccaggggctgcgagacgacaag
ccggcgacggatatcgtcgccgaaaagccagccgcggcgccgcagggcggtgcccggggc
gggtccgccaagcagaccggcaaggcggctggcaacgccggaccgaatctgcgcatcacc
caccccgaccgcgtgatcgatgccagtagcgggaccaccaagctgcagctggcggagtac
tacgcccgggtcgccggctggatactgccccatctgcagaatcgccctgtagcgctggtc
cgcgcccccgagggcctcgctggcgagctgttcttccagaagaacgccgaccgtctggcc
atccccggcatcgaaaccatgggcaaggaatattccggccagccggtgatgatggtcaac
aacgctgaggcgctgatcggcgcggtgcagatgggcaccatcgaattccacacctggaat
gcaacgtccgcggatctggaacggcccgatcgcttcatcctcgaccttgatcccgatccg
gcgctgccgtggaaggcgatggtcgaagcgacccagctgacactggcagtgctcgacgag
ctggggctgcagtcgtttgccaagaccagcggcggcaagggtatccacctggtggtcccg
ctcaccccgtctgccggatggagcgaggtgaaaagcttcagccaggccatcgtcaaacat
atggccaagctgcttcccgaacggttttctgcggtgtcagggccgaagaatcgcgtcgga
cgcatcttcatcgactatctgcgcaacagccagggtgccaccaccatcggccccttcgcc
gcgcgcacccgtgaaggcatgccggtatcggtgcccatcttccgcgaggagattaccgag
atcccgagcgccaacctctggactgtccataacctgcacgaacggctcgaggagctggat
gatgatccctgggccggctatgccgaagttgagcagaccattactgccgagatgcgcgaa
cgtctcggtttgaaacgttga

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