Parastagonospora nodorum: SNOG_01225
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Entry
SNOG_01225 CDS
T01161
Symbol
SNOG_01224
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pno
Parastagonospora nodorum
Pathway
pno03022
Basal transcription factors
pno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SNOG_01225 (SNOG_01224)
09124 Replication and repair
03420 Nucleotide excision repair
SNOG_01225 (SNOG_01224)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pno03021
]
SNOG_01225 (SNOG_01224)
03400 DNA repair and recombination proteins [BR:
pno03400
]
SNOG_01225 (SNOG_01224)
Transcription machinery [BR:
pno03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SNOG_01225 (SNOG_01224)
DNA repair and recombination proteins [BR:
pno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SNOG_01225 (SNOG_01224)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FAA_hydrolase
Ssl1
C1_4
VWA_2
Tfb4
Motif
Other DBs
NCBI-GeneID:
5968721
NCBI-ProteinID:
XP_001791876
UniProt:
Q0V439
LinkDB
All DBs
Position
Unknown
AA seq
716 aa
AA seq
DB search
MPDSDYSFDGEDGSEEEYVGSRAEPSKTASNTRAQGTSKRQTKDDRPPPKRHAWETEDSR
TVAKTVILADDGSLGKSVQEKEEERKRKRLRKDTKPFQRGIIRHVVLVLDLSEAMMEKDM
RPNRYITMINYAQDYVREFFEQNPISQMSVLGMHDEFVGAGQSDAIPHTKSWDKRGHRGL
WIAVVHGPRRHTPDGKSLRARPGDEGEYTIATDQEMLKELLIATTTPPVIRQTATTTDAP
PPESAAALMMMGFPSRVVEDKPTMCACHGNLTMGGYTCSRCSAKVCSLPITCPSCQLTLL
LSTHLARSYHHLFPLRNWATVSWSRAREKGSKECVSCLSSFSKPPASDTERTQTEQNLET
NGHKRDADDSEEQKASESGRYECRACESHFCIDCDMFAHMVLHNCPGCLSQLDPSAIAQF
QFRPLSSTTRMSFDRLIRFTTPSGAERYGNLAQETPTREIEGKEVEVLEGSVKSGFRKSG
GKEIVGKLLSPLRREDVNVILCVGLNYRRHAEECNLQIPENPAIFMKPSDALAGPLEDVP
IHKDCQSMLDYEGELTIVIGKDCKNVSAANFQDYVLGYTVGNDVSARNYQLPANVSGGQF
GYAKSFDKFCPIGPCIASTKVIPDPQKLTYWTKVNGEKRQETGTDDMIYTIGQVIEHLSR
GTTLRAGTAILTGTPSGVGLFMEPKNFLKDGDEVEIYVDGIGSIINKMKFEKSSVL
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgcccgattcagactactcatttgatggtgaagatggctccgaggaagaatatgtaggc
tcgagggccgagccatcaaagaccgcatcaaacacacgcgcccaaggaacgagtaaaagg
cagacaaaagatgaccggccaccaccaaaacggcatgcgtgggagacggaggactcgcgg
acagtagccaagaccgtgatactcgcggatgatggctccttgggtaaaagtgtgcaggag
aaggaggaggagcggaagcgcaaaaggttacggaaggatacaaagccattccaacgaggc
ataatacgacatgttgtgctagtattggatctgtctgaggcgatgatggagaaggacatg
cgaccgaaccgctacatcacgatgatcaactacgcccaggattacgttcgcgaattcttc
gagcagaatccgatttcccaaatgagcgtgttgggcatgcacgatgaattcgttggagct
ggccagagcgacgctataccacacaccaagtcatgggacaagagaggtcatcgtggtctt
tggatcgctgttgtccatggacccaggagacatacaccagacggtaaaagcctgcgtgcg
cgaccgggagacgagggcgagtataccattgctacggatcaagaaatgcttaaggagctg
ctgatcgcaaccaccacaccgccagtcattcgacaaacagcgacaacgacggatgcgccc
ccacccgaatcagctgctgcccttatgatgatgggctttccctcacgcgtggtagaagac
aagcctactatgtgtgcctgccacggcaatctcacaatgggaggctatacatgctcgcga
tgcagcgcaaaagtctgtagcttacccatcacctgcccaagctgccagctcacacttctc
ctctccacccatctcgcacgaagttaccaccacctctttcctctgcgcaattgggccaca
gtaagctggtcgcgcgcacgtgagaagggcagcaaagagtgcgtgagctgtctgtcctcc
ttctccaaaccacccgcctcagacacggagcgcacgcagaccgagcagaacctagagacg
aatgggcacaaaagagacgcagacgacagtgaagagcaaaaagccagcgagtcaggcaga
tacgaatgcagagcatgcgaaagccacttctgcatcgactgcgacatgttcgcgcacatg
gtgctgcacaattgcccgggctgtctgagtcaattggaccccagcgcgattgcgcagttc
caattccgccccctctcatcaaccacaagaatgtccttcgaccggctcatccgcttcacg
acgccctcgggcgcggagcgctacggcaatcttgcgcaagaaactccgacgcgcgagatt
gagggcaaggaagtcgaggtgctggagggtagtgtgaagagcgggtttaggaagagtggg
ggcaaggagattgtggggaagcttttgagtccgctgaggagggaggatgttaatgttatt
ttgtgcgtggggctgaattataggagacatgcggaggagtgtaatctccaaataccagag
aaccccgcgattttcatgaagcccagcgatgctctagcgggacctctggaagacgtacca
atccacaaggactgccaatctatgctggactatgaaggcgaactcactatcgttattggc
aaagattgtaagaacgtatcagcagcgaacttccaagactacgttctcggatacacagtc
ggcaacgacgtgtcagctcgcaactaccagctcccagcaaacgtgtccggcggccaattc
ggatatgccaaatcgttcgacaaattctgccccattggcccatgcatcgcaagcacgaag
gtcatcccagacccgcagaaactgacatactggaccaaggtcaacggtgagaagagacaa
gagactggtaccgacgacatgatttacacaattggtcaggtcattgagcacctttcaaga
ggaacgacattgagggctggtactgcgattttgactggaactccaagtggtgtcggactg
tttatggagccgaaaaacttcttaaaggatggtgatgaagttgaaatttatgtcgatgga
attggcagcattatcaacaagatgaagtttgagaagagtagcgttttgtag
DBGET
integrated database retrieval system
