Parastagonospora nodorum: SNOG_01300
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Entry
SNOG_01300 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pno
Parastagonospora nodorum
Pathway
pno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SNOG_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pno03021
]
SNOG_01300
03019 Messenger RNA biogenesis [BR:
pno03019
]
SNOG_01300
Transcription machinery [BR:
pno03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SNOG_01300
Messenger RNA biogenesis [BR:
pno03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
SNOG_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
VHS
Motif
Other DBs
NCBI-GeneID:
5968790
NCBI-ProteinID:
XP_001791945
UniProt:
Q0V3W4
LinkDB
All DBs
Position
Unknown
AA seq
565 aa
AA seq
DB search
MSLPAAEVAADFRDALQDLRMNSRPEISNLTLIAKENTEYAQAISTELEQHIKSTRPEFK
LPALYVLDSIVKNVGTPYTVYLGRNMYRTFMDAYLVMDQGTRKAMEGLLRTWKQPVPESL
DNRPVFPADVTQDIENALAKMRNAIQQQVQRPAHALPARPPTTVAWRDTATPPQNMARYA
APNDPRARPYGPPMHGNGPPVHYQSPQQQSAPMSSNDLADLKAEIAQLISTTQARFATNF
NDPSLRKTLEALLGLKHILDTQTLPPQQLDAVPPAPAPTGTPTANLAALLAQFSKPGATP
PVSQATPVQSTPVPQLPPQPPAASAALGSADWLLKALSSGQGLPFNLNGGPMAAQPMSRQ
TSAPTNVLDQIELTTASMKKPRFHLISRLYEAKPNICATCGRRFDATAEGKEKKARHMDW
HFKVKDPDANKRGVHRSWYIGEKEWIDYREVDETAPPHESTAAAAANKPKKQAKDRYISV
PQDPVLQQAPCPICQEKFETQWNVDANDFVWMDALQVGGKVYHATCFEEYSKGAGIPMPG
TPDSVLGKRKADLGGELEGKKIRAF
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcccgctgctgaagtggcagccgactttcgagatgcgcttcaagacctgagg
atgaacagtcgaccagagatcagcaatctaacccttatcgccaaggagaacacagagtac
gcccaagccatatcaaccgaactcgagcagcacatcaagtcgacacgcccagaattcaag
cttccggctctgtacgtgctcgactcaatcgtcaagaacgtcggcacgccttatacagtc
taccttggtcgtaacatgtatagaacgttcatggacgcttacctagtcatggatcaaggc
acccgcaaggccatggaaggactgctgagaacatggaaacagccagtgccagagtccttg
gataaccgccctgtgttcccagcagacgtgacacaggacattgaaaatgcactcgctaag
atgcgtaatgctattcaacaacaggttcaacgcccagcgcatgcgcttccagctcgacca
cccaccacagtagcttggagagacactgcgactccgccacagaacatggcgcgatatgca
gcaccaaacgacccgcgtgctcgaccttacgggcctccgatgcatggaaacggccctcca
gtgcattatcagtctccgcagcagcaatcagcacccatgtcgtcaaatgacctcgctgat
ttgaaagccgagatcgcacaactgatcagcactacgcaggccagattcgcaacgaacttc
aatgatccgtctcttcgtaagacgctggaggcactactcgggttgaagcacatcctagac
acccagacgctccctccgcagcaattggacgctgtcccgccagcaccggcgccgactggg
acgcccactgccaatcttgctgccctgcttgctcagttcagcaagcctggggccacacca
ccagtttctcaggcgacacctgtgcaaagcacgcccgttccacaactgcctcctcagccg
ccggccgcatctgctgccctcggtagtgctgattggcttctcaaagccctgagcagtggt
cagggtctgccattcaatctaaatggaggtcctatggcggcacaacctatgtcgcgccag
acatcggctcctacaaacgtcttggaccagatcgagctcaccactgcatcaatgaagaag
ccacgattccatcttatttctcgtctctacgaagctaagcctaacatatgtgcaacttgc
ggtaggcggttcgatgctactgcagagggcaaggagaagaaggctcgccatatggattgg
catttcaaagtcaaggatcctgatgcgaacaagcgtggtgtgcaccggagttggtacatt
ggtgagaaggagtggatcgactacagggaagtagacgagacggctcctccgcatgagagc
actgccgctgccgccgcaaacaagcccaagaagcaggcgaaggaccgctacatcagcgtg
ccccaagatcctgttctacagcaagcaccgtgtcccatctgccaagagaagttcgagacg
cagtggaatgttgacgccaacgacttcgtgtggatggatgcactgcaagttggtggcaag
gtctaccacgctacatgtttcgaagagtacagtaagggtgctggtatcccgatgccaggc
acgcctgactcagtgcttggaaagaggaaggcggacttgggaggagaactagaaggcaag
aaaatcagggcgttttga
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