Parastagonospora nodorum: SNOG_08115
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Entry
SNOG_08115 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pno
Parastagonospora nodorum
Pathway
pno03022
Basal transcription factors
pno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SNOG_08115
09124 Replication and repair
03420 Nucleotide excision repair
SNOG_08115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pno03021
]
SNOG_08115
03400 DNA repair and recombination proteins [BR:
pno03400
]
SNOG_08115
Transcription machinery [BR:
pno03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SNOG_08115
DNA repair and recombination proteins [BR:
pno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SNOG_08115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
5975338
NCBI-ProteinID:
XP_001798440
UniProt:
Q0UJE9
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MAMLYMPSSFPAADLEAWFKPSARSERVQALDILERLHILGSKREDDKSLSYSLIPGFQR
SLRHAIEGSGTHRTFGVPASKAERGEKRLSIEFLDAHAREQWEGILFFMVSGAAGFQPGS
VKMDVGPGTKKLLHAGDLVRTVHGTPRITKEGFSFVLQETNAQVWNLLIVYLKMVDDLGM
SETEVLSFLFMLGSLELGQDYSTSTLSPSQLHMLDDLSAMGIVYRSSKDSPTFYPTRLAT
TLTSDSGALPGSDVGTTEKPDSKAQNKGFIIVETNYRLYAYTNSLIQIAILSLFTKLQHR
FPNLVSGKLTKESVHRAVQAGITSAQIISYLTTYAHPQMQKSNPPLPPTVMDQIRLWEYE
GERVEVTTGYLMREFGSESEYRDVMGYAQALGVLVWKNDANRCFFVSHVEQVAGYLKKKK
EGKGGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgctctacatgccctcgtcttttcccgccgccgatctcgaagcctggttcaag
ccctcggcgcgtagcgaacgtgtacaagcccttgatattctcgaacgcctgcatatcctc
ggttcgaaacgggaagacgataagagcttgtcgtactcgctcattccggggtttcagcgt
agcttgcgccatgccatcgaagggtcgggcacgcatcgcacgtttggtgtgccggcgtcg
aaggccgagagaggggagaagaggcttagtattgagtttctggatgcgcatgcaagagag
cagtgggagggcatattgttcttcatggtcagcggagctgcagggttccagccagggagc
gtgaagatggacgtcgggcctgggacgaagaagctgttacatgcgggagatctggtcagg
acagtgcatgggacaccgagaatcactaaggagggattcagcttcgtgctgcaggagacg
aatgcccaggtgtggaatctgctgatagtatacctcaagatggtcgacgatctgggcatg
tcagagaccgaagtcctctccttcctcttcatgctcggctccctcgaactcggccaggac
tactctacttcgaccctctctcccagtcaactccacatgctcgacgacctctctgccatg
ggcatcgtctaccgcagctccaaagactcacccacattctaccccacccgcctcgctacc
accctgacatccgactccggcgccctccccggctcagacgtcggcaccacggagaagccc
gacagcaaggcccaaaacaagggcttcatcattgtcgagaccaactacagactctacgca
tacacaaacagtctgatccagattgccatcctcagcttgtttaccaaactccaacatcga
tttcctaacctcgtctccggcaagctcacaaaggaatccgtccatcgcgccgtccaagca
ggcatcacgtccgcgcaaatcatctcctacttaaccacctacgcccatccgcagatgcaa
aaatctaacccgcccttgccacctaccgtcatggaccagatccgcctgtgggagtacgaa
ggcgagcgtgtcgaagttaccacgggctatttgatgcgggagtttgggtcggagagcgag
tatagagatgtgatgggctatgcgcaggcattgggcgtgctggtgtggaagaatgatgcg
aatagatgcttttttgtcagtcatgtggagcaggtggcggggtacttgaagaagaaaaag
gagggcaagggagggaggtag
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