Paenibacillus naphthalenovorans: IJ22_50340
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Entry
IJ22_50340 CDS
T04167
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IJ22_50340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_50340
Enzymes [BR:
pnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IJ22_50340
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IJ22_50340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ALS25296
UniProt:
A0A0U2M9R5
LinkDB
All DBs
Position
complement(5028080..5028988)
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AA seq
302 aa
AA seq
DB search
MAVTAKHKKTKGALRVDGHELTITNPDKPLWPEKGITKAMYLEKLAQLSPYLLTYCKNRY
LTTIRFPHGWNDKSFYQKNAPEPTPDFVKTAVLESINYVHLDSLPTLLWLGNLACLEFHP
SFHRIGETLPVEWLIDIDPSVDPEPRIMEAAEIIGEILEGMKIKSVPKTSGATGVQIYVP
IPADRGYTFEELRGIGQFVASYAVQKHPKLFTVERLKKDRGTLIYIDYLQHWYGKTLSAP
YTPRARKDATVSTPLTWEEVSLRCDPRDFHLLNIIERLQQKGDLIAQLPPQNLDHVLSFI
RK
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgaccgctaaacataagaaaacgaagggcgccttgagggttgatggtcatgaa
ctgacgatcacgaatcccgataagccgttatggcctgagaaggggatcaccaaagcgatg
tatttggagaagctggcccagctttcaccctacttgctgacttactgcaaaaaccgttat
ttgacgacgatccggtttcctcatggctggaacgataaatcgttttaccagaaaaatgcg
ccggagcccacgcccgattttgtgaaaacagctgtgcttgagtcgattaattacgttcac
ctcgactctctgcctacgctgctgtggttgggaaatttggcctgtctggagtttcatccc
tccttccatcggatcggggagacgcttccggtcgaatggttgatcgacatcgacccgagt
gtcgacccggagccgcgcatcatggaggctgcggaaatcatcggagagatccttgagggc
atgaagatcaagtccgtgcccaagacatccggtgcaaccggcgtacaaatttatgttccg
attccggctgaccgcgggtataccttcgaagagctgcgtggtatcgggcagttcgtcgcc
tcctatgcggtacaaaagcacccgaagctgtttacggtggagcggctgaagaaagaccgc
ggcactttaatttatatcgactatttgcagcattggtacggcaaaacgctctccgctccc
tatacgccccgtgcccgcaaggatgccacggtgtcgacgccgctgacctgggaggaagtg
tctttgcgctgcgatccgcgcgactttcacctgctcaacatcattgaacgcctgcagcaa
aaaggagacctgattgctcagctccccccgcaaaatctcgatcatgtactgtcgttcatc
aggaaataa
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