Erythrobacter neustonensis: A9D12_07005
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Entry
A9D12_07005 CDS
T04416
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pns
Erythrobacter neustonensis
Pathway
pns03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9D12_07005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pns03400
]
A9D12_07005
Enzymes [BR:
pns01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9D12_07005
DNA repair and recombination proteins [BR:
pns03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9D12_07005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANK12734
UniProt:
A0A192D4M7
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Position
1494990..1497506
Genome browser
AA seq
838 aa
AA seq
DB search
MGKRSDPLASYNAKRDFTKTAEPKGEVPANGGAGGRRFIVQKHAASRLHWDLRLEIDGVL
KSWAVTKGPSRDPAVKRLAVRTEDHPLSYAQFEGTIPAREYGGGTVMLWDRGTWAPIAGK
SAADLEDGHLHFTLDGERMKGEWLLIRLKPRPGEKRENWLLRKIGDDHAAPDEALVEHHL
TSVSTGRSMAEIAAGTRGSAASARADQKDVAAGMAKATKPGAKRPRRRLAAKLPGFRAPQ
LATLVDAVPTGNGWMHEIKFDGYRALIAARGEDVRVFTRSGQDWTAKFGPLVAAIAALDL
PAALIDGEIVAHDAVGNPDFSALQALLKRGRGAQGPDDSLAFYAFDLLEADGVDLTALAN
IERKERLEALLAAAEPPIHVADHVIGAGEQLLRAMCGAGQEGIISKAIDAPYLHKRSHSW
VKVKCIRRQEFVIVGWKASTTNARPFASLLLAQHEDGSLAYKGNVGTGFGDEELGRMAAR
LRRLERKTPPLDVDRAAARGVTWVKPALVAEIAFAEFTAQGRVRHASFAGLRADKPAREV
ASETPAPPPVTASDVDITNRDRVIFPDTGQTKGELADYYAAIAPAMLPFVAERPVSLVRC
PQGRARKCFFQKHDSGALGDAVRHVPIRQKDGGSEDYLFVTDQRGILQCVQMGTIEFHAW
GSRVDAVDQPERMIFDLDPDEGLDFEAVKRAATEIRAHLADLGLISFAMLSGGKGVHVVI
PLTPGHDWDTHKDFARRFAEALSLAAPDRFTATMSKARRSGKIFIDWLRNQRGATAVIPF
SARARAGAPVAVPIAWDELAKFEDAHPFAIGDAEALLHRAKSPALQGWGFAAQSLPAF
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcgttccgatccgctcgcatcctacaacgccaagcgcgatttcaccaagacc
gccgaaccgaagggcgaggtgcctgccaatggtggcgcaggcgggaggcgtttcatcgtc
cagaaacacgccgcctcacggctgcactgggacctgcggctcgaaatcgacggtgtcctc
aagagctgggccgtcaccaaggggccaagccgcgatcctgccgtcaaacgcctggcggtt
cgcaccgaggatcatccgctttcctatgcgcagttcgagggcacgattccggccagagaa
tatggcggcgggacggtgatgttgtgggaccgcggcacatgggcaccgatcgcgggcaag
agcgcagccgatctcgaagacgggcaccttcacttcacgctcgacggcgagcggatgaag
ggggaatggctgctgatccggttgaagcccaggcccggcgaaaagcgcgagaactggttg
ctccgcaagatcggcgacgaccacgctgcgcctgacgaagcgctggtcgagcatcacctg
acgagtgtttcgacaggccgatcgatggccgaaattgccgcaggcacacgaggcagcgcc
gcctctgcccgcgccgatcaaaaagacgttgctgcgggcatggcaaaggctaccaagccc
ggcgcgaaacgcccccgtcggcgccttgccgccaaactgcccgggttccgggcgccgcag
ctggcgacgctggtcgacgcggtgccgaccggcaatggctggatgcacgagatcaagttc
gatggataccgcgcgctgatcgcagccaggggcgaagatgtgagggtcttcacccgttcg
ggccaggactggaccgccaagtttggcccgctggtggcggcaatcgccgcgctcgatctc
ccggcggcactgatcgatggcgagatcgtcgcgcatgatgccgtcggcaatcccgatttt
tcggcattgcaagcgctcctcaaacgcggtcgcggcgcgcaggggccggacgactccctg
gctttctacgccttcgatctgctcgaagcggacggtgtggatctgaccgcacttgccaat
atcgagcgcaaggaaaggctcgaagcgctgctcgccgccgcggaacctccgatccatgtc
gccgatcatgtcatcggcgcaggtgaacaactcctccgcgccatgtgcggtgccgggcag
gaaggcatcatctccaaggcgatcgatgcgccttacctccacaaacgcagccatagctgg
gtgaaggtcaagtgcatccggcggcaggaattcgtgattgtcggatggaaggcctccacc
acgaatgcgcgcccctttgcctcgctgctgctggcccagcacgaagacggttcgctggca
tacaagggcaatgtcggcaccggtttcggcgacgaggaactgggccgcatggcagcgcgg
ctgagacggctggagcgcaaaacgccgccgctcgacgtcgaccgcgcagccgcgcgaggc
gtcacctgggtaaagccggcattggtcgccgaaatcgcctttgccgaattcacggcgcaa
gggcgggtgcgtcacgccagtttcgccgggctgcgcgccgacaagcccgcgcgcgaggtc
gcctccgagacacccgcgccgccgccagttacggcaagcgacgtcgacatcaccaatcgc
gatcgcgtgatctttcccgatacaggccagaccaagggcgaactggcggactattatgcg
gcgatagcgccggccatgctgcccttcgttgccgagcgaccggtcagcctggtgcgttgt
ccccaaggccgtgcgcgcaaatgcttttttcagaaacacgacagcggtgcgctcggcgat
gcagtgcgacacgtcccgatccggcaaaaggacggcggaagcgaggactatctgttcgtc
accgaccagcgcggcatcctgcaatgcgtgcaaatgggaacgatcgagttccacgcctgg
ggatcgcgggttgacgcggtcgatcagcccgagcgcatgatcttcgacctcgatcccgac
gaggggctggacttcgaggccgtcaagcgcgccgcaaccgagattcgcgcgcatctcgcc
gatctcggtctgatcagctttgccatgctgtcaggagggaagggcgttcatgtggtcatc
ccgcttacgcccggacatgactgggacacgcacaaggacttcgcgcggcggtttgccgaa
gccttgtcgctcgccgcgccggatcgtttcaccgccaccatgagcaaggccaggcgcagc
ggaaaaatcttcatcgactggctgcgcaatcaacgcggcgcgaccgcggtgataccattt
tccgcccgtgcccgcgccggcgcgcccgtcgcggttccgatcgcatgggacgagctcgcg
aaattcgaggacgcccatccctttgcgatcggcgatgccgaagcgttgcttcaccgggcc
aagtctcccgcgttgcaaggctggggctttgctgcgcagtcgctcccggcgttttga
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