Erythrobacter neustonensis: A9D12_10885
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Entry
A9D12_10885 CDS
T04416
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pns
Erythrobacter neustonensis
Pathway
pns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9D12_10885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pns03019
]
A9D12_10885
Enzymes [BR:
pns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9D12_10885
Messenger RNA biogenesis [BR:
pns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9D12_10885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UTP25
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANK13362
UniProt:
A0A192D675
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All DBs
Position
2344850..2346409
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AA seq
519 aa
AA seq
DB search
MTTFADLGLSQPVLQALDLKGYNTPTPIQEQAIPPVLKGRDLLGIAQTGTGKTAAFMLPS
IDRLREADKQIPFKSCRMLVLAPTRELAVQIADSAKDYGALAGLKVQSIVGGTSVGKDRN
KLHRGTDILVATPGRLLDLIDQKAFNLNGIEVLVLDEADQMLDLGFIHALRKIRELAPKD
RQTLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKLSLLTMIL
QRRHEVPGEFERVLIFTRTKHGADRVVKKLEQAGIPANAIHGNKSQPQRQRALDEFRKAR
VPVLIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGRDGIAIAFCAEDERA
YLKDIRKVTGAELERLPLPDNFRAVVEGEGPTKPAPRVPMKRVQPRPLGQRKPQGEARGG
GDRRPQQGEGRRGEGERRSAPQGERRGAPQGERRPQGDRKPQQAHGQGRSGGNGGGGDRR
SPGSGGRPGGNGGGNGGGGNRGRGRPGGGGGGRPRAASV
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttttgctgacctcgggctgtcgcagcccgtgctccaggcccttgacctcaag
ggttacaacacgcccaccccgatccaggaacaggcgattccccccgtattgaagggccgc
gacctgctcggcatcgcgcagaccggcaccggcaagaccgccgcgttcatgctccccagc
atcgaccggttgcgcgaagccgacaagcagatcccgttcaaatcctgccgcatgctggtg
cttgcacccacgcgcgaactggccgtgcagattgccgacagcgccaaggattacggcgcg
cttgcgggcctcaaggtgcagtcgattgtcggcggcaccagcgtgggcaaggaccgcaac
aagctgcaccgcggcaccgatattctggtggcaacgccgggccgtctcctcgatctgatc
gaccagaaggcattcaacctcaatgggatcgaagtcctcgtccttgacgaagcggaccag
atgctcgatctcggcttcatccacgcgctgcgcaagatccgcgaactggcgcccaaggat
cgccagacgctgttcttcagcgccaccatgcccaaggcgatcaaggagctggtaagcggt
tattgcaacaaccctgtccaggtttcggtgacgcccgaaagcaccaccgccgaacggatc
gaccagtatctcttcatggtgcagcaggacgagaagctgagccttctcacgatgatcctg
cagcgccgccacgaggtgccgggcgaattcgaacgcgtgctgatcttcacccgcaccaag
cacggcgcggaccgcgtggtgaagaagctggagcaggcgggcatccccgccaacgcgatc
cacggcaacaagtcgcagccgcagcgccagcgcgcgctcgacgagttccgcaaggcacgc
gtgccggtgctgattgccacggacgttgccgcgcgcgggatcgatattccgggcgtcagc
cacgtcatcaattacgaactgcccaacgttcccgaacaatatgtccaccgcatcggccgc
accgcgcgcgccgggcgtgacgggatcgcgatcgccttctgcgcagaggacgaacgcgca
tacctcaaggacatccgcaaggtgacgggagccgagcttgaacggctgccgctgcccgac
aatttccgtgccgtggtcgaaggcgaaggcccgaccaagcccgcgccgcgcgtgccgatg
aagcgcgtgcagccgcgcccgctcggccagcgcaagccgcagggcgaagcgcgcggcggc
ggggatcgccgtccgcagcagggcgaaggtcgccgtggcgagggcgagcgccgcagcgca
ccgcagggcgaacgccgcggtgctccgcagggtgagcgtcgtccgcaaggcgatcgcaag
ccgcagcaagcgcatgggcagggccggtccggcggcaatggcggcggcggtgatcgtcgt
tcgcccggcagcggcggtcgtcccgggggcaatggtggcggcaatggcggcggtggcaac
cgcggccgcggtcgtcccggcggcggcggcggcgggcgtccgcgcgcagccagcgtctga
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