Pseudodesulfovibrio nedwellii: SYK_01570
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Entry
SYK_01570 CDS
T09024
Symbol
rfbC
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw00521
Streptomycin biosynthesis
pnw00523
Polyketide sugar unit biosynthesis
pnw00541
O-Antigen nucleotide sugar biosynthesis
pnw01100
Metabolic pathways
pnw01110
Biosynthesis of secondary metabolites
pnw01250
Biosynthesis of nucleotide sugars
Module
pnw_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
SYK_01570 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
SYK_01570 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
SYK_01570 (rfbC)
Enzymes [BR:
pnw01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
SYK_01570 (rfbC)
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Motif
Pfam:
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
BDQ35797
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All DBs
Position
176603..177172
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AA seq
189 aa
AA seq
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MQVHETGFPGLLVLTPKVFQDERGFFLESYNYDAFKRIGISCDFVQDNHAYSKDVGVLRG
LHFQTPPRAQAKLVWVTRGAVMDVVVDLRKGSPTFGKWQHVILSSVNFKRMFIPAGFAHG
YVTIMPDTEFQYKVDAPYSAEHDGGIVWDDPDTGVDWASALDGRTPVLSERDKRLPRLVN
FNSPFNFEG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtccatgaaacaggatttcccggccttctcgttttgacaccgaaagtgtttcag
gacgagcggggtttttttttggaaagctacaattacgatgcgttcaaacgtatcggtatt
tcatgtgattttgttcaggataatcacgcctattccaaagatgttggagtgttgcgtggt
ttacattttcaaacacctccaagagctcaagccaaattggtctgggttacccgtggtgca
gtgatggatgtggttgttgatttgcgcaaaggctctcccacttttgggaagtggcaacat
gttattctcagtagtgtgaatttcaagcgtatgttcattcctgcgggttttgctcatggg
tatgtcaccattatgcctgacactgaatttcaatataaggttgatgctccctactctgct
gaacacgacggcggtatcgtctgggatgatccagacactggtgtggattgggcttcggcc
ttggatggacgaacgccagtcctttctgaaagagacaaacggttgccccgtttggtgaat
tttaattctcccttcaactttgagggttaa
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