Polaribacter sp. ALD11: CW731_09340
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Entry
CW731_09340 CDS
T05264
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
poa
Polaribacter sp. ALD11
Pathway
poa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CW731_09340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poa03400
]
CW731_09340 (mfd)
Enzymes [BR:
poa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CW731_09340 (mfd)
DNA repair and recombination proteins [BR:
poa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CW731_09340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AUC85480
UniProt:
A0A2K8XRR5
LinkDB
All DBs
Position
2092174..2095503
Genome browser
AA seq
1109 aa
AA seq
DB search
MSKQNIVNQYQTSENVSQIITQLQQEQNHFQISNLVGSSLSFVVSETFKKADKPYLLIFN
DKEEAAYYLNDLEQLLGEKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAV
IVTYPTALFEKVVTKKELEKNTLKVAVGESLSLDFVNEVLFEYKFRRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRIEFFGDEIDSIRSFDVETQLSKEKLKKVSVMPNVENKTLQENRE
SFLKYISPKTVIFTKNRNLLVGNLDKFFEKAEEAFHDLSKEINHSKPSELFCDGAFIENQ
LQDFTLVDVGSQDQKDSKIIFNTIPQPSFNKQFNLLIDNLTEYHKGGFTNYIFCANEQQA
QRFHDIFDDSEQEVHYETVVFPLYQGFVDVDNKLVCYTDHQIFERYHKFRLKNGYAKKQA
ITLQELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLAYGERDILYVSIHSLHK
ISKFNGKDGKPPKIYKLGSGAWKKIKQKTKARVKHVAFNLIQLYAKRKLQKGFAFGPDTH
IQHELEGSFMYEDTPDQFTSTQDVKNDMEKEQPMDRLVCGDVGFGKTEVAVRAAFKAVDN
GKQVAILVPTTILAFQHYKTFTERLKDFPIKIDYLNRFRTAKQKTEAINGVNDGSVDIII
GTHQLTNQRIKFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLM
AARDLSVIKTPPPNRHPIESNVIRFGEETIRDAISYEISRGGQVFFIHNRIENIKEVAGL
IQRLVPTAKVGIGHGQMEGKKLEGLMLSFMNNEFDVLVSTTIIESGLDVPNANTIFINNA
NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIAMK
DLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFKDLYPTDNTKPKEFVKE
VTIDTDFEILFPDDYVNSVTERLSLYNKLSDLEGEKELQVFESEIIDRFGEIPNEVNDLL
DSVRIKWLAKELGLEKIILKQKRMIGYFVENQQSDFYQTEAFSRMLKYVQNNGKSCVMKE
KETKNGLRLLITFIRIDSVKTALNILQKI
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagcagaacattgtaaatcaatatcaaacatctgagaacgtttcgcagattatt
acacagcttcaacaagaacaaaaccattttcaaatatctaatttggtgggttcttcgttg
tcttttgttgtttcagaaacttttaaaaaagcagataagccctaccttttaatttttaat
gataaggaagaagctgcttattatttaaatgatttagagcagcttttaggagaaaaaaat
gtacttttttacccgggttcttaccgaaggccttatcaaattgaagaaaccgacaatgcg
aatgttttattgcgttctgaagttttaaacagaatcaactctagaaaaaaacctgctgta
attgtaacgtatccaacggctctttttgagaaagtagtaacaaaaaaagagttagaaaaa
aacacgttaaaagttgctgttggtgaaagcttatcgttagattttgtgaacgaagtttta
tttgaatacaaatttagacgtgtagattttgttacagaaccaggagatttctccgtacgt
ggaggaattattgatgtattttcattttctaatgatgaaccctacagaattgaatttttt
ggagatgagatcgatagtattcgttcttttgatgtagaaactcaactttctaaagagaaa
ttgaaaaaggtttctgtaatgccaaatgttgaaaataaaacattgcaagaaaatagagag
agcttcttaaaatacatctcacctaaaacagtaatattcactaaaaacaggaatttatta
gttggtaatttagataaattcttcgaaaaggcagaagaagcgtttcatgatttatctaaa
gaaataaaccattcaaaaccttctgaacttttttgtgatggtgcctttatagaaaatcaa
ttacaagattttacgttggttgacgtaggaagtcaagatcagaaagattcaaaaattatt
ttcaacacgattccacagccttcttttaacaagcaatttaatttattaattgataattta
acggaatatcacaaaggaggtttcaccaattatatattctgcgctaacgagcaacaagca
caacgttttcatgatattttcgatgactctgaacaagaagtgcattatgaaactgttgtc
tttcctttatatcaaggttttgtagatgtagataataaattggtttgttatacagatcat
caaatcttcgaacgttaccataaattcagattgaagaacggctacgctaaaaagcaagca
atcacacttcaagaattaaacaaattagaaattggagattatgtaacccacatggatcat
ggaattggaaaatttggtggtttacaaaaaatagatgttcaaggaaaaaaacaagaagct
attaaattggcttatggggaaagagatatcttatatgtaagtattcactctttacacaag
atttctaaattcaatggaaaagatggcaaacctcctaaaatatacaaattaggttctggt
gcttggaagaaaatcaaacaaaaaacaaaagcaagagttaaacatgttgcatttaattta
attcaattatacgcgaaaagaaagcttcaaaaaggttttgcatttgggccagatactcat
atacagcatgaattagaaggaagttttatgtatgaagacacgccagatcaatttacttct
acacaagatgtaaaaaacgatatggaaaaagaacaacccatggatagattggtctgtggt
gatgttggttttggtaaaacagaagttgcagtaagagcagcttttaaagcggtagacaat
ggaaagcaagtcgcaattttagtacccacaactatattggcttttcagcattacaaaact
tttacagaaaggttaaaagacttccctattaagattgattatttaaataggtttagaact
gcaaaacaaaaaacagaagccataaatggtgtaaatgatggctctgtagatattattatt
ggtacgcatcaattaacaaatcagcgtataaaatttaaagatttaggattattaattatt
gatgaagaacagaaatttggtgttgctgtaaaagataaattaaaaaccttaaaagaaaat
gtagacacattaacgctaactgcaactccaattcctagaacgttacaatttagtttaatg
gcagcaagagatttgtctgtaattaaaacaccaccaccaaacagacacccaatagaaagt
aatgtgattcgttttggcgaagaaacaattagagatgccatttcttatgaaatttctaga
ggaggacaagttttcttcattcataatagaatagaaaatataaaagaagttgcaggctta
atccaaagattagttcctactgctaaggttggcattggccacggacaaatggaaggtaaa
aaactagagggattaatgctcagttttatgaataatgaatttgatgtcttggtttctacc
accattatagaaagtggtttagatgtacccaatgcaaatactatttttattaataatgcg
aataatttcggactttccgatttgcaccaaatgcgtggtagagttgggcgatctaataaa
aaagcattctgttattttataacaccaccgtatcatatgatgacggatgatgctagaaaa
cgtatcgaagcattggtactgttctctgatttaggaagcggaattaacattgctatgaaa
gatttagaaattcgtggtgctggagatttattaggtggtgaacagagtggttttataaat
gatattgggtttgacacctatcaaaaaatattacaagaagccattgaagaattaaaggaa
aatgaatttaaagacttatacccaacagacaatacgaagccaaaagaatttgtaaaagaa
gtaactatagatactgattttgaaattttatttccagatgattatgtaaattctgttaca
gaacgcttgagcttatataacaaattatctgatttggaaggcgaaaaagaactacaggtt
tttgaatcagaaattatagatcgttttggcgaaatacctaatgaagtgaatgatttatta
gattcggtaagaattaaatggttggcaaaagaattaggtttagagaaaattattctaaaa
caaaaaagaatgattggttattttgttgagaatcaacaaagtgatttttaccaaacagaa
gcattttctagaatgttaaaatacgttcaaaacaacggtaaaagctgtgtaatgaaagag
aaagaaactaaaaatggcttgcgtttattaatcacttttattagaatcgacagcgtaaaa
acggccttaaatattttacaaaaaatatag
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