Paenibacillus odorifer: PODO_04905
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Entry
PODO_04905 CDS
T03326
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PODO_04905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_04905
Enzymes [BR:
pod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PODO_04905
DNA repair and recombination proteins [BR:
pod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PODO_04905
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
AIQ72652
UniProt:
A0A1R0WTA3
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All DBs
Position
complement(1130758..1131642)
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AA seq
294 aa
AA seq
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MPAAIKGTITIDGEEIIITNPEKLLWPECGITKRIYLQKLAALSPYLLRYCRDRLLTVIR
YPHGISGMSFYQKNAPDPLPAFVQTAVHENINYIKLQGLPELIWLGNLAALEFHPSLHYV
GSELPCEWMIDLDPSLEIEPRIMEATAIVGAVLTSLGLSSVPKTSGATGVQIIVPIETGV
TFDGLRKIGHFVGRYVTEKHPNLFTLERLKKNRGDKIYFDYLQHYSGKTLAAPYTPRARP
LATVSTPLLWEEVQQNVSPSNFHLLNIEERLQRMGDLLEKVPPQPVEQLIAKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggcagcgatcaaaggtacaattaccatagacggagaagaaatcatcatcactaat
ccagagaagctgctgtggcctgaatgtggcattacaaaacggatttatctgcaaaagctc
gctgcactctctccctatctgctgcgttattgccgagaccggctgcttaccgtcattcgt
tatccgcacggcatctctggaatgtccttttatcagaaaaatgcgcctgatcctcttccg
gcctttgtccaaaccgctgtacacgagaatattaactatatcaagctgcaaggcttacct
gagctgatctggctggggaatctggctgctttggaatttcacccttccctgcattatgta
ggcagcgagctgccctgtgaatggatgattgatcttgatccttcacttgaaatcgaacct
cgtatcatggaagcaactgcgatcgttggggcggttttaacctcccttggcctctcctct
gtacccaaaacctctggtgctaccggggtgcagatcatcgtccctatcgagactggtgtt
acttttgatggattgcggaaaatcgggcattttgtgggtcgttatgtcaccgaaaagcat
cccaacctgttcacactggaacgtctaaaaaagaatcgcggagataaaatctattttgac
tacctccagcattatagcggcaaaacattagctgcaccttacacaccgcgtgcaagaccg
cttgctacagtttctacacccttgctctgggaggaggttcagcaaaatgtatctccctct
aattttcatctgcttaatatcgaggaacgccttcagcgtatgggagatcttttagagaaa
gtgccaccacagcctgttgaacaactcatcgctaagctcccataa
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