Candidatus Phytoplasma oryzae: PIE28_02150
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Entry
PIE28_02150 CDS
T08823
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
poe
Candidatus Phytoplasma oryzae
Pathway
poe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PIE28_02150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poe03019
]
PIE28_02150
Messenger RNA biogenesis [BR:
poe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PIE28_02150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
DsrE
Motif
Other DBs
NCBI-ProteinID:
WCA22417
LinkDB
All DBs
Position
complement(477946..479625)
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AA seq
559 aa
AA seq
DB search
MQQEINFSALGGIGENGKNFYLLKINSSYFILDAGIKYPDILTHGIDCIIPEYTKLDLIK
DQIKAIFITSAFETHSGALSYLIQNLNVPIYSSDFVIEVIKNNLQQNNINTKNVTLNIVN
ENSKISFSDTNVFFFGISHFLPETLGLSFETPQGFIVYISEMHFLQSKNKNFQTNFSSLA
KLGEKKVLAFIHASQGAFSIIKQKKEELLEYYFSSYFASIKNNIIISFLIPDLLKIQLAI
DLAVEFNLKIVILGRKSEKIIDLALKKGYLKIPEDFLVDLKNSNDFLKYKNLVIIVVGKR
FEPFYRLQRMCKQTDRLMKLNPQDQILLLSIEVTGIDEIKSKTLDILARNGFIVDILEED
LLTLSYNYEENFKLMLHLLKPQFLLPVVGEYRHQYQIKKISKNFNYEEKNIFMLENGDKW
IFDSKTKPYIKKKFFKNLGEILIDGTPVLDGNNYILKDRELLANDGVIIIVCGISMRNRR
IVGNTELVSKGFLDKSKIENLLDKIKEIFIKNIYDNFLNNQNQLKWSDFKNNLKEILSKF
IFKETKKRPVIIPVLISIY
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagaaatcaatttttcagctttaggaggtataggagaaaatggtaaaaatttt
tatttactaaaaattaattcttcttattttattttagatgcaggtattaaatatcctgat
attttaactcacggaatagattgtattattcctgaatatactaaattagatcttattaaa
gatcaaattaaagctatttttatcacttctgcttttgaaacacattcaggcgctttatct
tatttgatccagaacttaaacgttcctatttattcttcagatttcgttatagaagttatt
aaaaataatcttcaacaaaataatataaatactaaaaatgttactttgaatattgtaaat
gaaaattctaaaataagtttttcagacactaatgtatttttttttggtatatcacatttt
ttaccagaaactttgggattatcttttgaaactcctcaaggatttattgtttatataagt
gaaatgcattttttgcaatctaaaaataaaaattttcaaactaatttttctagtttagct
aaattaggagaaaaaaaagttttagcctttattcatgcttctcaaggagcttttagtatt
ataaaacaaaaaaaagaagaacttttagaatattattttagtagttattttgctagtatt
aaaaataatattattatttcttttttaataccagatttgttgaaaattcaattggctatt
gatttagctgtagaatttaatttgaaaattgttattttaggaagaaaaagtgaaaaaatt
attgatttagctttaaaaaaaggttatttaaaaatacctgaagattttttagtagattta
aaaaattcaaatgattttttaaaatataaaaatttagttataattgtagtaggtaaaaga
ttcgaacctttttatcgtttacagagaatgtgtaaacaaacagatcgtttaatgaaatta
aatccacaagatcaaattttactattgtctatagaagtaacaggtattgatgaaattaaa
agcaaaacattagatattttagctcgaaatggttttattgtagatatcttagaagaagat
ttattaacactttcttataattatgaagaaaattttaaattaatgttgcatttattaaaa
cctcaatttttattgcctgttgttggagaatatagacatcaatatcaaataaaaaaaatt
tctaaaaattttaattatgaagaaaaaaatatttttatgttggaaaatggagataaatgg
atttttgatagtaaaactaaaccttatattaaaaaaaaattttttaaaaatttaggagaa
attttaatagatggaactcctgttttagatggtaataattatattttaaaagatagagaa
cttttggcaaatgatggagttattattatagtttgtggtattagtatgagaaatagaaga
attgtgggtaatacagaactagttagcaaaggttttttggataaaagtaaaattgaaaat
cttttggataaaataaaagaaatttttataaaaaatatttatgataattttttgaataat
caaaatcagcttaaatggagtgattttaagaataatttaaaagaaatattgtctaaattt
atttttaaagaaactaaaaaaagacctgttattattcctgttttaatttctatttattaa
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