Pontibacillus sp. HMF3514: GS400_18675
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Entry
GS400_18675 CDS
T06374
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pof
Pontibacillus sp. HMF3514
Pathway
pof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GS400_18675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pof03400
]
GS400_18675
Enzymes [BR:
pof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GS400_18675
DNA repair and recombination proteins [BR:
pof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GS400_18675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QHE53921
UniProt:
A0A6P1HME9
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Position
3696946..3698733
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AA seq
595 aa
AA seq
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MKPMLPTLSGDAPKGDDWVYEVKYDGFRVLLEWSKNQVKLVSRNGNDLTTKFPEIKKFCE
EHQDTYDEDLPLVLDGELVILNTKIQANFPLLQQRNRMGNKKRIQETSDARPVTFIAFDI
LKHKGKDTFELTLKKRRKHLESLSFTSGDRLQLVSQYETFDDIWEEVNLHLGEGVVAKRL
NSKYREGERTDKWIKLKNWRVLSGILSSYNQENGYFSLRVYEDESLEELGSCKHGLSSED
GETLRTFFTSKGTKKGEIYKLRPSVCVDVKCLHQQKNDLREPMFDSFRFDLSPEECSEQK
KQWDLAQFPDVNITHPDKVLWPKPGYKKRNLLLYMRRIAPYIMPFLKDKKLTVIRFPDGI
HEESFFQKHLPDYAPDYVESIKRDGEIYTLCQNLSTLIWFGNQGALEYHVPFERVHEEKP
HEIVFDLDPPSNDDFEMAVHAVQLFKHLLDKLELTSFVKTSGGKGMQIHIPIPKDRLTYD
ETRAFTEKLATLLVKQEPSMFTIERLKKNRGNRLYIDYVQHAEGKTIIAPYSPRGREHAT
VATPLYWDEVTESLSPTDFTIENVLKRVENHGCPFANYFDIGEQQNLEHIYKLIE
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgttacctacattatcaggagatgctcctaaaggtgatgattgggtatat
gaagtaaagtatgatggatttcgtgttcttttagagtggtcaaaaaatcaggtgaaactg
gtgagtcgaaatggaaatgatttaaccactaaattccctgagattaagaaattctgtgaa
gaacaccaagatacatatgacgaggatctacccttggttttggatggagagcttgtcatt
cttaatactaaaatccaagctaattttccgttgcttcaacaacgtaacagaatgggaaac
aagaagcgaatacaagaaacatctgacgcgcgtccagttacatttatagcttttgacatt
ctcaaacataaagggaaagatacgtttgagctaactctcaaaaaacgcagaaaacatctt
gaatctttatcctttacatcaggagatcgtctgcaactcgtttctcagtacgaaacattt
gatgacatatgggaagaagtcaaccttcatttaggagaaggagtcgttgcaaagcgttta
aatagcaaatacagagaaggagagcggacagataagtggataaaattgaaaaattggcgt
gtgttgtctgggattctctcttcatataatcaggaaaatggttacttttctttgagagtt
tatgaggatgaatcattggaggaacttggatcatgtaagcatggactttcttctgaggat
ggagaaacactccgaaccttttttacatctaaaggaacaaaaaaaggtgaaatctataag
ctgagaccaagtgtttgcgtagacgtgaaatgccttcatcaacaaaaaaatgatttaaga
gaaccgatgtttgactcatttcgttttgatttatcaccagaggaatgttcagaacaaaaa
aagcaatgggatttagcacaatttccagacgtaaatattacgcaccccgataaggtttta
tggcctaagccagggtataaaaagcggaaccttctcttgtatatgcgacgcatagcacct
tatattatgccttttctaaaggacaaaaaacttacggttattcgttttccagatggaatt
catgaggaatctttctttcaaaaacatttacctgattatgcacctgattatgttgaatct
attaagcgtgatggagagatttatacgctatgtcaaaacctctcgactcttatttggttc
ggtaaccaaggagcattagaataccatgttccttttgaacgtgtgcatgaggagaaacca
catgaaattgtgtttgatttagatcccccctccaatgatgactttgaaatggcggtacat
gcagtacagttatttaaacacctattggataagctagagctcacttcatttgttaaaacc
tctggtggaaaaggtatgcagattcatatcccaattcctaaggaccgcttaacatacgat
gaaacacgagctttcactgaaaaactagctactttgttagtaaaacaagagccatctatg
tttacgattgaacgcttaaagaagaatcgtgggaatcgtttatacattgattacgttcaa
catgcagaaggaaaaacgattattgcaccatattctccaagaggtagagagcatgcaact
gtggccacacctttatattgggatgaagtaacggagtcactttctccaacagactttacg
atcgagaatgtattgaagcgagtggagaatcatggatgcccttttgcaaattactttgat
attggagaacaacaaaacttggaacacatttataagttgatcgaataa
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