Polynucleobacter paneuropaeus: DPM16_06065
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Entry
DPM16_06065 CDS
T05507
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh00540
Lipopolysaccharide biosynthesis
poh01100
Metabolic pathways
poh01250
Biosynthesis of nucleotide sugars
Module
poh_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
DPM16_06065 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
poh01005
]
DPM16_06065 (rfaD)
Enzymes [BR:
poh01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
DPM16_06065 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
poh01005
]
Core region
DPM16_06065 (rfaD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
NAD_binding_10
KR
Motif
Other DBs
NCBI-ProteinID:
AWW44826
LinkDB
All DBs
Position
complement(1196434..1197453)
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AA seq
339 aa
AA seq
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MTIIVTGAAGFIGANIVQGLNARGEKNIIAVDDLRPADKYRNLADLDIIDYLDKDEFLEA
FRSGRFGKVKAVFHEGACSDTMETDGIFMMANNYRYTMDLLDICTEQKVQLLYASSAATY
GGSDVFVESREHEKPLNIYGYSKFLFDQVMRKRFSEKANTAQVVGFRYFNVYGPRESHKG
RMASVAFHQYHQYKKDGVVKLFGEYGGYAQGQQSRDFVSVEDVVKVNLFFFDHPEISGIF
NLGSGRAQPFNDVAHAVVNSLRKLDGANSESLEQLVKMKAIEYIPFPEVLKGKYQCFTQA
DLTKLRAAGYAEPFLNVEQGVSRYIDWLAANADFLANPL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
gtgactattatcgtaactggagctgccggctttattggtgccaatattgttcagggcctc
aatgctcgtggcgagaaaaatattattgcagtcgacgacttgcgtcctgctgataaatat
cgcaatttagccgatctcgatattattgattaccttgataaagatgagtttctagaagct
tttagaagcggtcgctttggtaaagtgaaggccgtttttcatgaaggcgcttgctccgat
acgatggaaacagacggcatcttcatgatggcgaataattatcgctacaccatggatctg
ctcgatatctgcactgagcaaaaagtgcaattactctatgcctcttctgcagccacctac
ggcggatcagatgtgtttgttgaaagccgtgagcacgagaagcctttaaatatctacggc
tattccaaattcttattcgaccaagtgatgcgtaagcgcttttctgaaaaagccaatacc
gcccaagtggttggttttagatatttcaatgtgtatggcccacgtgaatcccacaaaggt
cgtatggcatcagtagccttccatcagtaccaccaatacaagaaagacggagtggttaag
ctctttggtgaatatggtggctatgcacaaggacagcaaagccgtgactttgtctcggta
gaggatgtagtgaaggtcaacctcttcttctttgatcatccagaaatcagcggcatcttt
aatttgggaagcggccgtgcccaaccctttaatgacgtagcccatgccgtagtgaattca
ctcagaaagctggatggtgctaattcagaatcattagaacaacttgtcaagatgaaggct
attgagtacattcccttcccagaagtactcaaaggtaagtatcagtgctttacacaggca
gacctcaccaaactcagagccgccggttacgccgaaccctttctcaatgttgagcagggg
gtcagtcgttatatcgactggctggccgctaatgcggatttcttagctaatccgctgtaa
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