Pseudomonas orientalis: BOP93_13240
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Entry
BOP93_13240 CDS
T05323
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BOP93_13240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poi03400
]
BOP93_13240 (ligD)
Enzymes [BR:
poi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BOP93_13240 (ligD)
DNA repair and recombination proteins [BR:
poi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BOP93_13240 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUZ46515
UniProt:
A0A2L0RWN1
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All DBs
Position
3076959..3079484
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AA seq
841 aa
AA seq
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MAKPLSEYNRKRDFGITAEPAGKPSAGKRKACALSFVIQKHAARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDDPHK
AYAAGKLKFSLVGEKLTGDWTLVRTRLKGSGDKQQWLLIKEKDQQARPSAEYDIVEAQPA
SVLSDAVVGKSKTKPEAKAATKTTPKASARKQAAAVPEAFSPQLATLVDRAPEGDWHYEI
KFDGYRILARIRGGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLNGDGLP
DFQALQNAFDIGRSLDIIYYLFDAPFLDGRDQREEPVEARRAALKSALSASKSKLLRFSE
AFAANHRDIFESACDLALEGVIGKRAGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGS
RTGFGALLLAVNDDTALVYAGRVGTGFDQASLKSIYAKLTALERTDSPLQKPLTSAQARG
VHWVEPSLVGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIREQPRTAKSVKAPKAKKTE
KEVKPVKAMKITHPERVIDQQSGTQKQELAQFYADISESILPFLRNRPVSLLRAPEGIEG
EQFFQKHSERMTIPHIKQLDKALDPGHARLMEIDSADALIGAVQMGTVELHTWGATTDKI
ETPDLFILDLDPDPALPWKSMLEAAQLTLSVLDEIGLQAFVKTSGGKGLHLIVPLARRDN
WDTVKAFAKAIAQFMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPG
LPVSVPISRDELSDLRGAQQWTVANLHERLRDLKDDPWAGYANRQKISKQMWDKLGAKPP
K
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccctgagcgagtacaaccgcaaacgcgacttcgggattaccgccgagccg
gcaggcaagccatcggccggcaagcgcaaagcttgcgccctgagctttgtgatccagaaa
catgctgcgcgcaacctgcactatgattttcgcctggaactggacggcgtgctgttgagc
tgggccgtgcccaaaggcccgagcctggacccgagccagaaacgcctggcggtccacgtc
gaagaccatcccctgagttatggcggcttcgaaggcagcattcccgccgggcaatatggc
gccggggatgtgatcgtctgggaccgtggcatctggcaaccccatgacgacccgcacaag
gcctacgcggctggcaaactgaaattcagcctggtcggcgaaaaactcaccggcgactgg
accttggtgcgcacccggctcaaaggcagcggcgacaagcaacaatggttgctgatcaag
gaaaaggaccagcaggcgcgtccttcggctgagtacgatatcgtcgaggcacagcccgcc
agcgtgctcagcgatgctgtggtcggcaaatccaagaccaagcctgaggccaaggcagca
accaaaacgacacccaaggcgagcgcgcgaaagcaggcagccgccgtgcccgaagcgttc
tccccgcaactggcaacgttggttgatcgggcgcccgagggtgactggcactacgagatc
aagttcgacggttaccgcatcctcgcgcgcatccgcggcggcgaggtacgcctgttcact
cgtaatggccacgattggaccgagcgcctgccgcgccaggtcaaagccttgcaagcgctc
aagcttaaggacagctggcttgatggcgaagtggtcagccttaacggcgatgggttgccg
gatttccaggcattgcaaaatgccttcgacattggccgcagcctcgacatcatttactac
ctgttcgatgcgccgtttcttgacggccgtgatcagcgcgaagagcccgtcgaagcgcgt
cgcgcggcacttaaatctgcgctgtccgccagcaagagcaagctgctgcgcttctccgaa
gcctttgccgccaaccaccgcgacattttcgaaagcgcctgtgacctggccttggagggt
gtcatcggcaagcgtgccggcagcccttacgtgtccagccgcagtgctgactggatcaag
ctcaaatgccgcctgcgccaggagttcgtgattgtcggttacacgcggccccaaggctcg
cgcaccgggtttggcgcgctgctgctggcagtcaacgacgataccgcactggtgtatgcc
gggcgggtgggcaccggtttcgaccaggcgtcgctcaaatccatctatgccaagcttacc
gcgctcgaacgcacggactcgccgctgcaaaagccgttgaccagcgcccaggcgcgcggc
gtgcactgggttgagccgagcctggtcggtgaagtgcaatttgccgagtggactcgcgaa
ggcgtggtgcgccaggctgcctttgtgggcatgcgcaccgacaagcccgctgcgcagatc
atccgtgagcagccgcgtacggccaaatcggtgaaggcgccaaaggcgaaaaaaaccgag
aaggaggtgaaacccgtgaaggccatgaaaatcacccaccctgagcgggtcatcgaccag
cagagcggcacgcaaaagcaggaactggcacagttctacgccgatatcagcgaatcgatc
ctgcccttcctgcgcaaccggcccgtctcactgctcagggcgccggaaggcatcgaaggc
gaacagttcttccagaagcattccgagcgcatgaccatcccgcacatcaagcagttggac
aaggcactggaccccggccatgcccgcctgatggaaatagacagcgccgatgccctgatc
ggcgcggtgcaaatgggcacggttgagctgcacacctggggcgctaccacggataagatc
gaaacccccgacctgttcatactcgacctcgacccggaccccgccctgccctggaaatcc
atgctggaagcggcgcagttgacgctgtcggtactggatgaaataggtttgcaggccttc
gtcaaaaccagcggtggcaaaggcttgcacctgatcgtaccgctggcgcggcgcgataac
tgggacaccgtcaaagccttcgccaaggccatcgcccaattcatgacccagcaactgccg
gagcgctttaccgccaccagcggcccgaagaaccgcgtgggcaaaatcttcatcgattat
ctgcgcaacgcccggggcgccagcactgtggcggcttactccgtgcgggcgcgaccaggc
ctgccggtgtcggtaccgatcagtcgcgatgaattgagtgacttgcgcggtgcccagcaa
tggacggtggccaacctgcacgagcgattgcgcgacttgaaagacgacccttgggccggc
tatgccaatcggcagaagatcagcaagcagatgtgggacaagctgggcgcgaagccaccg
aagtga
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