KEGG   Pseudomonas otitidis: PtoMrB4_27800
Entry
PtoMrB4_27800     CDS       T06890                                 
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
poj  Pseudomonas otitidis
Pathway
poj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:poj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PtoMrB4_27800 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:poj03400]
    PtoMrB4_27800 (ligD)
Enzymes [BR:poj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PtoMrB4_27800 (ligD)
DNA repair and recombination proteins [BR:poj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PtoMrB4_27800 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme Peptidase_M29
Other DBs
NCBI-ProteinID: BCA28803
UniProt: A0A679GEG1
LinkDB
Position
complement(3047451..3049937)
AA seq 828 aa
MSDALNDYARKRDFDATPEPGTSARRLGKKASGHALRYCIQKHDATRLHYDFRLELEGTL
KSWAVPKGPSLDPAARRLAIHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGVWIPQGDP
VASYRAGRLRFELQGEKLAGQWNLVRTQLPGKQEQWFLIKHRDAAAHPESELSITESRPD
SVLSERRLVPREARTQAPRTRRKAAKPKAAALPAQLKPQLATLVDRPPAGDWHYEVKFDG
YRLLARLDHGQVQLFTRNGHDWTARLPAQARALSRLPVDEAWLDGEVVVMDEDGQPDFQA
LQNAFEVGRSEAALYYLFDLLHLNGSDLRETPLEQRREALAQLLEPLDEDGLLRYSQSFT
EPAEAVLDSACRLGLEGLIGKRAGSLYAGRRSSDWIKLKCKRRQEFVIVGYTEPKGSRSH
FGALLLALHDAHGELRYAGKVGTGFDQAVLARVHARLKTLKTRQPACTQPPRGAEARGVH
WLRPEALAEVAFAEMTREGIVRQAVFKGLREDKPARAITRDEPVATQRLQGEETASSAAV
RITHPQRVIDPASGLTKGDVARYYETIAPWLLPHLAQRPVALLRVPEGIEGEQFFQKNPG
SLGTQAIGVLDKARAGQPGLLLDSPEALLGAVQMGTLELHTWNATTADLAHPDRFVLDLD
PDPALPWKTMLEATELTLAVLDELGLRAFLKTSGGKGVHLIVPLAPKHDWDTVKAFSQGI
TQHMARNLPQRFAAKSGPRNRVGRIFIDYLRNGAGATTVCAYSLRAREGLPVSVPVSFEE
LATLRNAQAWSLRTLHKRLDDLGEDPWRDLPGTRQRLTVAMRRKLGLA
NT seq 2487 nt   +upstreamnt  +downstreamnt
atgagcgacgccctgaacgactacgcccgcaagcgcgacttcgacgccacccccgagccc
ggcacctccgcgcgccggctcggcaagaaggcgtccgggcacgcgctgcgctactgcatc
cagaagcacgatgcgacgcgcctgcactacgacttccgcctggagctggagggcaccctg
aaaagctgggcggtgcccaagggcccgagcctggacccggccgcccggcgcctggccatc
cacgtggaggatcacccgctggactacgccgacttcgaaggccacatccccgagggtcac
tacggcgcgggcgatgtgatcgtctgggaccggggcgtgtggattccccagggcgacccg
gtggccagctaccgtgccgggcgcctgcgcttcgaactgcagggcgagaagctcgccggc
cagtggaacctggtgcgcacccagctgccgggcaagcaggagcaatggttcctgatcaag
caccgggacgcggcggcccaccccgagagcgagctgagcatcaccgaatcacgcccggac
agcgtgctcagcgagcgccgcctggtgccccgcgaggccaggacccaggccccgcgcacc
cggcgcaaggcggccaagcccaaggccgccgccctgcccgcgcagctcaagccgcagctg
gccaccctggtggaccgtccaccggccggggactggcactacgaggtgaagttcgacggc
taccgcctgctggcccgcctcgatcacggccaggtgcagctgttcacccgcaacggccat
gactggaccgcccgcctgccggcccaggcccgggccctgtcacgcctgccggtggacgag
gcctggctggacggcgaagtggtggtgatggacgaggacggccagcccgacttccaggcc
ctgcagaacgccttcgaggtgggccgcagcgaggcggcgctgtactacctcttcgacctg
ctgcacctcaacggcagcgacctgcgcgagacgccgctggagcagcgccgggaagccctg
gcgcagctgctggaaccgctcgacgaggacggtctgctgcgctattcccagtccttcacg
gaacccgccgaggcggtgctcgacagcgcctgccggctgggcctggagggcctgatcggc
aagcgcgccggcagcctctacgcgggccggcgcagcagcgactggatcaagctcaagtgc
aagcgccggcaggaattcgtcatcgtcggctacaccgagcccaagggcagccgctcgcat
ttcggtgccctgctgctggcgctgcacgatgcccacggcgaactgcgctacgccggcaag
gtgggcaccggcttcgaccaggccgtgctcgcccgcgtgcatgcccggctcaagaccctg
aagacgcgccagccggcctgcacccagccgccgcgcggggccgaggcgcgaggcgtgcac
tggctgcgcccggaggcgctggcggaagtggccttcgccgagatgacccgtgaaggcatc
gtgcgccaggcggtgttcaagggcctgcgggaggacaagccggcccgcgccatcacccgc
gacgagcccgtcgcgacccagcgcctgcagggcgaggagacggccagttcggcggccgtg
cgcatcacccacccgcagcgggtgatcgacccggccagcggcctgaccaagggcgatgtg
gcccggtactacgaaaccatcgccccctggctgctgccgcacctggcccagcgcccggtg
gccctgctgcgggtgccggaaggcatcgagggcgagcagttcttccagaagaacccgggc
agcctgggcacccaggccatcggtgtgctggacaaggcccgcgccggccagccgggcctg
ctgctggacagccccgaggcgctgctcggtgccgtgcagatgggcaccctggagctgcac
acctggaatgccaccaccgccgacctggcgcaccccgaccgcttcgtgctggacctcgac
ccggacccggccttgccctggaagaccatgctggaggccaccgagctgaccctggcggtg
ctcgacgaactgggcctgcgggccttcctcaagaccagcggcggcaagggcgtacacctg
atcgtgcccctggctccgaagcacgactgggacacggtgaaagccttcagccagggcatc
acccagcacatggcgcgcaacctgccccagcgcttcgcggccaagtccggcccgcgcaac
cgggtcgggcgcatcttcatcgactacctgcgcaatggcgccggcgccaccaccgtctgc
gcctactccctgcgggcgcgggaggggctgccggtatcggtgccggtgagcttcgaggag
ctggcgacgctcaggaatgcccaggcctggtccctgcgcaccctgcacaagcgcctggac
gacctgggcgaagacccctggcgggacctgcccggtacccgccagcgcctgaccgtggcg
atgcgccgcaagctgggcctggcgtag

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