Pseudomonas otitidis: PtoMrB4_27800
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Entry
PtoMrB4_27800 CDS
T06890
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
poj
Pseudomonas otitidis
Pathway
poj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PtoMrB4_27800 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_27800 (ligD)
Enzymes [BR:
poj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PtoMrB4_27800 (ligD)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PtoMrB4_27800 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Peptidase_M29
Motif
Other DBs
NCBI-ProteinID:
BCA28803
UniProt:
A0A679GEG1
LinkDB
All DBs
Position
complement(3047451..3049937)
Genome browser
AA seq
828 aa
AA seq
DB search
MSDALNDYARKRDFDATPEPGTSARRLGKKASGHALRYCIQKHDATRLHYDFRLELEGTL
KSWAVPKGPSLDPAARRLAIHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGVWIPQGDP
VASYRAGRLRFELQGEKLAGQWNLVRTQLPGKQEQWFLIKHRDAAAHPESELSITESRPD
SVLSERRLVPREARTQAPRTRRKAAKPKAAALPAQLKPQLATLVDRPPAGDWHYEVKFDG
YRLLARLDHGQVQLFTRNGHDWTARLPAQARALSRLPVDEAWLDGEVVVMDEDGQPDFQA
LQNAFEVGRSEAALYYLFDLLHLNGSDLRETPLEQRREALAQLLEPLDEDGLLRYSQSFT
EPAEAVLDSACRLGLEGLIGKRAGSLYAGRRSSDWIKLKCKRRQEFVIVGYTEPKGSRSH
FGALLLALHDAHGELRYAGKVGTGFDQAVLARVHARLKTLKTRQPACTQPPRGAEARGVH
WLRPEALAEVAFAEMTREGIVRQAVFKGLREDKPARAITRDEPVATQRLQGEETASSAAV
RITHPQRVIDPASGLTKGDVARYYETIAPWLLPHLAQRPVALLRVPEGIEGEQFFQKNPG
SLGTQAIGVLDKARAGQPGLLLDSPEALLGAVQMGTLELHTWNATTADLAHPDRFVLDLD
PDPALPWKTMLEATELTLAVLDELGLRAFLKTSGGKGVHLIVPLAPKHDWDTVKAFSQGI
TQHMARNLPQRFAAKSGPRNRVGRIFIDYLRNGAGATTVCAYSLRAREGLPVSVPVSFEE
LATLRNAQAWSLRTLHKRLDDLGEDPWRDLPGTRQRLTVAMRRKLGLA
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccctgaacgactacgcccgcaagcgcgacttcgacgccacccccgagccc
ggcacctccgcgcgccggctcggcaagaaggcgtccgggcacgcgctgcgctactgcatc
cagaagcacgatgcgacgcgcctgcactacgacttccgcctggagctggagggcaccctg
aaaagctgggcggtgcccaagggcccgagcctggacccggccgcccggcgcctggccatc
cacgtggaggatcacccgctggactacgccgacttcgaaggccacatccccgagggtcac
tacggcgcgggcgatgtgatcgtctgggaccggggcgtgtggattccccagggcgacccg
gtggccagctaccgtgccgggcgcctgcgcttcgaactgcagggcgagaagctcgccggc
cagtggaacctggtgcgcacccagctgccgggcaagcaggagcaatggttcctgatcaag
caccgggacgcggcggcccaccccgagagcgagctgagcatcaccgaatcacgcccggac
agcgtgctcagcgagcgccgcctggtgccccgcgaggccaggacccaggccccgcgcacc
cggcgcaaggcggccaagcccaaggccgccgccctgcccgcgcagctcaagccgcagctg
gccaccctggtggaccgtccaccggccggggactggcactacgaggtgaagttcgacggc
taccgcctgctggcccgcctcgatcacggccaggtgcagctgttcacccgcaacggccat
gactggaccgcccgcctgccggcccaggcccgggccctgtcacgcctgccggtggacgag
gcctggctggacggcgaagtggtggtgatggacgaggacggccagcccgacttccaggcc
ctgcagaacgccttcgaggtgggccgcagcgaggcggcgctgtactacctcttcgacctg
ctgcacctcaacggcagcgacctgcgcgagacgccgctggagcagcgccgggaagccctg
gcgcagctgctggaaccgctcgacgaggacggtctgctgcgctattcccagtccttcacg
gaacccgccgaggcggtgctcgacagcgcctgccggctgggcctggagggcctgatcggc
aagcgcgccggcagcctctacgcgggccggcgcagcagcgactggatcaagctcaagtgc
aagcgccggcaggaattcgtcatcgtcggctacaccgagcccaagggcagccgctcgcat
ttcggtgccctgctgctggcgctgcacgatgcccacggcgaactgcgctacgccggcaag
gtgggcaccggcttcgaccaggccgtgctcgcccgcgtgcatgcccggctcaagaccctg
aagacgcgccagccggcctgcacccagccgccgcgcggggccgaggcgcgaggcgtgcac
tggctgcgcccggaggcgctggcggaagtggccttcgccgagatgacccgtgaaggcatc
gtgcgccaggcggtgttcaagggcctgcgggaggacaagccggcccgcgccatcacccgc
gacgagcccgtcgcgacccagcgcctgcagggcgaggagacggccagttcggcggccgtg
cgcatcacccacccgcagcgggtgatcgacccggccagcggcctgaccaagggcgatgtg
gcccggtactacgaaaccatcgccccctggctgctgccgcacctggcccagcgcccggtg
gccctgctgcgggtgccggaaggcatcgagggcgagcagttcttccagaagaacccgggc
agcctgggcacccaggccatcggtgtgctggacaaggcccgcgccggccagccgggcctg
ctgctggacagccccgaggcgctgctcggtgccgtgcagatgggcaccctggagctgcac
acctggaatgccaccaccgccgacctggcgcaccccgaccgcttcgtgctggacctcgac
ccggacccggccttgccctggaagaccatgctggaggccaccgagctgaccctggcggtg
ctcgacgaactgggcctgcgggccttcctcaagaccagcggcggcaagggcgtacacctg
atcgtgcccctggctccgaagcacgactgggacacggtgaaagccttcagccagggcatc
acccagcacatggcgcgcaacctgccccagcgcttcgcggccaagtccggcccgcgcaac
cgggtcgggcgcatcttcatcgactacctgcgcaatggcgccggcgccaccaccgtctgc
gcctactccctgcgggcgcgggaggggctgccggtatcggtgccggtgagcttcgaggag
ctggcgacgctcaggaatgcccaggcctggtccctgcgcaccctgcacaagcgcctggac
gacctgggcgaagacccctggcgggacctgcccggtacccgccagcgcctgaccgtggcg
atgcgccgcaagctgggcctggcgtag
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