Pseudarthrobacter oxydans: SMD14_02170
Help
Entry
SMD14_02170 CDS
T09608
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pok
Pseudarthrobacter oxydans
Pathway
pok03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SMD14_02170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pok03400
]
SMD14_02170
Enzymes [BR:
pok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SMD14_02170
DNA repair and recombination proteins [BR:
pok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SMD14_02170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WPU09846
LinkDB
All DBs
Position
complement(480173..482581)
Genome browser
AA seq
802 aa
AA seq
DB search
MPAAKERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLIPAAYNRPATRKRW
VNGVGTADKPGEVFFQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLTWFGQINSLE
IHVPQWQVDSHGNQLNPDRLVLDLDPGEGAGLEACVEVALLARAILQDVGLDPVPVTSGS
KGIHLYAALDRSQTSDQVSGFARELARALEADHPVLAVSDMKKTLRKGKVLVDWSQNNAA
KTTIVPYSLRGRPTPMVAAPRTWEELGSPGLSHLDHKAVIRRVQEGKDPFAAVDNAGNDP
RLEKYRSMRDPGKTPEPFTGTAGRGNTFVIQEHHASRLHYDFRLEHEGVLVSWALPKGVP
ESGGKNHLAVQTEDHPLDYAGFEGTIPKGEYGAGEVTIWDHGTYELDKWINGREVIATLT
GSEGGGLGGTRKFALIHTGRGQGRDSEGQWLIHLMEPGRPGGRRRHAPPREGQEEARDKD
VAVRPGDYRPMMATSGDAADLQGSNWQFELKWDGVRAILVGDERTVRIFSRNGNDVTSTY
PELVDRACWPARPFVADGEIVAIGAAGRPDFGLLQGRMKLTRPADVARARVAIPVQLMLF
DLLHDDGTDLRRLPLAERRQRLEDFFTASGCPAGLSPVLEDRVDHILESARELGLEGVMA
KRTDSRYVSGQRTRTWIKLKVEQTQEVVVGGWRPGKGGREDTVGSLLVGIPDGTKLQYAG
RVGSGFSGRELAELRQTVERLARKTSPFLDVPRPDAADAHWIAPELVGEVTYSEWTGTGR
LRHPVWRGWRLDKDPAEVVREG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgctaaggagcgtgtcagggtggcagggcgggaactgaccctcaccaacctg
gacaagatcatctatccggagacgggcaccaccaaggcggacgtcctggcctactacgcc
gctgtggcccacgtcctgatcccggcggcgtacaacaggccggccaccaggaagcgttgg
gtgaacggcgtcgggaccgccgataagcccggcgaggtgttcttccagaagaaccttgag
gactcggctccgggctggctcccccgggcagccatcacccacaaggaccgcaccatctac
tacccgatggtcaacgaccccgccacccttacctggttcgggcagatcaattccctggaa
atccacgttccgcagtggcaggtggactcccacggcaaccaactgaaccccgaccggctg
gtcctggacctggaccccggcgaaggcgccggcctggaggcgtgcgttgaagtagccctc
ctggcgcgcgccatcctccaggacgtgggcctggaccccgtcccagtgaccagcggcagc
aagggcatccacctgtacgccgccctggaccggagccagacctctgaccaggtctccggc
ttcgcccgcgaacttgccagggcccttgaggccgaccacccggtcctggccgtcagcgac
atgaaaaagaccctgcgcaagggcaaggtcctggtggactggagccagaacaatgcagcc
aagacgactatcgtgccgtactcgctgcgtggccgccccacccccatggtggctgcgccc
cggacctgggaggagctcggctcccccggcctcagccacctggaccataaggcggtgatc
cggcgcgtgcaggaaggcaaggacccgttcgccgccgtcgataacgccggcaacgacccc
cggctggagaagtaccgctccatgcgtgatcccgggaagactccggaacccttcacgggc
acggccggcagggggaatacctttgtgatccaggagcaccacgccagccgcctgcactat
gacttccgcctggagcatgaaggagtgctggtgtcctgggcactgccgaagggggtgcct
gagtccggcggcaagaaccacctggcagtgcagaccgaggaccatcccctggactacgcg
ggcttcgaggggactattcccaaaggggaatacggcgccggcgaggtaaccatctgggac
cacgggacgtatgagctggacaagtggatcaacggcagggaagtcattgccaccctcacc
ggttcggaaggaggagggctgggcgggaccaggaagttcgcgcttatccacacagggcgg
gggcagggaagggattccgagggccagtggcttatccacctcatggagcccgggcggcct
ggcggacgacggcggcacgcaccgccgcgggaaggacaggaggaggcacgggataaagac
gttgcggtgcggcccggggactacaggcccatgatggccacctccggagacgccgccgac
ctgcagggcagcaactggcagttcgaactcaagtgggacggggtccgcgccatcctcgtg
ggagacgaaaggacggtacggatattcagccgcaacggcaacgatgtcaccagcacctac
cccgagctcgtggaccgggcctgctggccggcccggccgttcgttgccgatggtgagatc
gtggccatcggcgcggcgggaaggcccgacttcgggctcctgcagggaaggatgaagctc
acccggcccgccgacgtcgcacgggcccgggttgccattcccgtgcagctgatgcttttc
gacctgctgcacgacgacggaacggacctccggaggctgccgctcgccgagcgccggcaa
cggctggaggacttcttcaccgcatcgggctgccccgcggggctttctccggtcctcgag
gaccgggtggaccacatcctggagagtgcccgggagctgggcctcgaaggggtgatggcc
aagcggaccgacagccggtacgtgagcgggcagcggacccgtacctggatcaagctgaag
gtggaacagacgcaggaggttgtggtgggcggctggcgcccgggcaaaggcgggcgggaa
gacaccgtgggctcactgctggtgggcattccggacgggacgaagctgcagtacgcgggg
cgggtgggcagcggtttcagcgggagggaacttgccgaactgcggcaaaccgtggaacgg
ctggcccggaagacttcgccgttcctggacgttccgcgcccggatgccgccgacgcgcat
tggattgcccccgaacttgtcggcgaagtgacctacagcgagtggacgggaaccgggagg
ctgcggcatcccgtgtggcggggctggcggctggacaaggacccggcggaggttgtgcgc
gaaggctga
DBGET
integrated database retrieval system
