Pseudarthrobacter oxydans: SMD14_06550
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Entry
SMD14_06550 CDS
T09608
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pok
Pseudarthrobacter oxydans
Pathway
pok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMD14_06550 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pok03400
]
SMD14_06550 (mfd)
Enzymes [BR:
pok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMD14_06550 (mfd)
DNA repair and recombination proteins [BR:
pok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMD14_06550 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WPU10654
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All DBs
Position
1429990..1433691
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AA seq
1233 aa
AA seq
DB search
MSLPGPSNAGHTSTGPSLDGLRRALAADQTFARVRAEAARGFEVRGRDYQISAPAGLRPL
LLAEMADGVAAAAGEGHDDGRPGVVLAVTATGREAEDLTAALRAYLPADCVAEFPSWETL
PHERLSPRSDTVGRRLSVLRRLAHPETSASGPLRVVVAPVRAVVQPVVAGLGELVPVTLK
VGQEKPFTEVVRSLADAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVDQ
MRWFAVADQRSLSSPGLHHPTELHAPPCREILITPAVMSRAATLKAQLPAAADMLEKIAG
GITVEGMESLAPVLVDSMVPFVEQLPAGSISVVIEPEKVRTRAHDLAATNEEFLEAAWST
ASDGGTAPLDLSSQASAALHSASFRSLTETRTSSLEHGVSWWSITSLAQDEELLPDIDVL
NLHAREPRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVDT
LDHEPQAGIIEVTTAAVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAVD
PLQLVAGDHVVHEQHGIGKFVELIQRKITVGGSKDTAGVREYLVLEYAPSKRGAPGDRLF
VPTDQLDQVTRYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHA
FGPDTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAA
FKAVQDGKQVAVLVPTTLLAQQHYETFTERFSGFPLRVKALSRFQGTKETKETVEGVKSG
SVDVVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRT
LEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSTI
ERTAAKIRELVPEARVEVAHGKMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANT
LIVDGADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAG
MQLAMKDLEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELP
VNAHLPHDYVPGERLRLEAYRKLAAALTNEAIDEVLAELVDRYGEPPLPARNLVAVARFR
VGAREAGLSDVALQGNFIKFSPATLPESKVMRLNRMYPGSQSKPALDAVLIPKPKTARIG
GRDLQDAEILEWANGVIRNIFSDQPVTVAPTGS
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgagccttccaggcccgtccaacgccggccacaccagcacgggcccatcgctggacgga
ctgcgccgcgccctcgccgcggaccagaccttcgcccgcgtccgcgccgaggccgcccgt
gggttcgaggtccggggccgggactaccagatcagcgcacccgccgggcttcgcccgctg
ctgcttgccgagatggcggacggcgtggcggccgccgcgggcgaagggcacgacgacggc
aggcctggcgtcgtgcttgccgtcaccgcaaccggccgcgaggccgaggacctgactgcg
gcgcttcgggcgtaccttcctgcggactgcgtggccgaattccccagctgggaaaccctc
ccgcacgaacgcctctcgccgcgctcggacaccgtgggccgccgcctctccgtcctgcgc
cgcctggcgcacccggaaacgtccgcgtcgggcccgcttcgggtggtggtggcgcccgtc
cgcgccgtggtccagccggtggtggccggcctgggcgagctggtcccggtcaccctgaaa
gtgggccaggagaaacctttcacggaggtggtgcggagcctggcggacgccgcctacgcc
cgggtggacatggtgacgcaccgcggggagttcgccgtccgcggcggcatcatcgacgtc
ttcccgcccaccgaggaccaccctatccgcgtcgagttcttcggtgacgaggtggaccag
atgcgctggttcgcggtggcggaccagcgctcgctgtcctcgcccggcctgcaccacccc
accgaactgcatgccccgccgtgccgggaaatcctcatcaccccggccgtcatgtcccgg
gcagccaccctcaaggcgcagctcccggcagctgccgacatgctcgaaaagatcgccggc
ggcatcaccgtggagggcatggaatccctggcacccgtgctggtggactccatggtcccg
ttcgtggagcagctgcccgcaggctccatctcggtggtcatcgagccggagaaggtccgg
acccgggcccacgacctcgccgccaccaatgaggagttcctcgaggccgcctggtccacc
gcctcggacggcgggacggcgccgctggatctcagctcgcaggcaagcgccgcgctccat
tccgccagcttccgctccctcacggaaacgcggacctcatccctggagcacggggtctca
tggtggtccatcacgtcgctcgcgcaggacgaggaacttctcccggacatcgacgtcctg
aacctgcatgcgcgggaaccgcgcggctaccagggcgatgtggccgagatgatggacttc
atcggctcacatgtccgggaccagtggcggatcgttgtggccacggaaggccccggtcct
gcccagcgcctggcagagctgttccatgagaacgacatcccgtgcgcccgcgtggacacc
ctggaccacgagccccaggcgggcatcatcgaggtgaccaccgccgccgtcggacgcggt
tttgtcctggacgggctcaaactgggcctgctcaccgaagccgatctgctgggccgcacc
tccgccgggtccaccaaggacatgcgccgtatgccctccaaacgccgcaacgccgtggac
ccgctgcagctcgtggcgggggaccatgtggtccacgaacagcacggcatcggcaagttc
gtggagctgatccaacgcaagatcaccgtcggcggctcgaaagatacagccggggtgcgc
gagtacctggtcctcgagtacgcgccatccaagcgcggcgcgccgggggacaggctcttc
gttcccacggaccagctggaccaggtgacccgctacgtgggcggtgacacccccgtcctg
agcaagatggggggcgcggactgggccagcaccaagtccaaggcccggaaagccgtcaag
gagatcgccggcgagctgatccggctgtactcggcccggatggcgtcccgcgggcatgcc
ttcggcccggacactccttggcagcgcgagcttgaggaagccttcccctacgtggagacg
ccggaccagctcaccaccatcaacgaggtgaaggcggacatggagcgcgagatccccatg
gaccggctggtttccggcgacgtaggctacggaaagaccgagatcgccgtgcgcgccgcg
ttcaaggcagtgcaggacggcaagcaggtggccgtgctggtgcccaccacgctgctggca
cagcagcactacgagacgtttaccgaacggttctccggattccccttgcgggtcaaggca
ctgtcgcggttccaggggacaaaggaaaccaaggagaccgtggagggcgtcaagagcggc
tcggtggacgtcgtcatcggcacgcaccggttgctgtccaaggactttgccttcaaggac
ctgggcctggtgatcgtggacgaggaacagcgcttcggcgtggagcacaaggaagctctc
aagaagatgcgcaccaatgtggacgtgctggccatgagcgcaacccccattccgcgcacc
ctggagatgtcgctgacgggaatccgcgagacgtccaccctggccaccccgccggaggaa
cggcacccggtcctgacctacgtgggtccctacacggacaagcagacctccgcggccatc
cggcgtgagctgatgcgcgaaggccaggtcttcttcgtccacaaccgggtctccaccatc
gagcggaccgcggcgaaaatccgtgagctggtcccggaggcgcgcgtcgaggtggcgcac
ggcaagatgtccgaaagccgcctggagcagatcatcgtggacttctgggaaaagcgattc
gatgtgctggtgtgcaccaccatcatcgaaaccgggttggatatttccaacgccaacacc
ctgatcgtggacggcgcggacaagtacggcctgtcccagctgcaccagctccgcggccgc
gtgggccggggccgtgaacgcgcctacgcctacttcctctacccgtccgagaagcccttg
ggcgaggtggcgctggaacggctcaaggccgtggccacccacaacgagctcggtgccggc
atgcagctggccatgaaggacctggagatccgcggcgccggaaacctgctgggcggtgag
cagtccggccacatccagggcgtgggcttcgacctctacatccgcctggtgggcgaggcc
gtggctgacttccgcggcgaggccgaggagaaggccgccgagatgaagattgaactgccg
gtcaacgcgcaccttccgcacgactacgtgcccggggagcggctccgccttgaggcgtac
cgcaagctcgcggctgcgctcacgaatgaggcaatcgacgaagtcctggcggaactggtt
gacaggtatggcgagccgccgctcccggcccggaacctggtggccgtggcccgcttccgg
gtgggagcccgtgaagccgggctgtccgatgttgccctgcagggcaacttcatcaagttc
tcgccggccacccttcctgaatccaaggtcatgcgcctgaaccggatgtacccggggtcc
cagtccaagcccgccctcgatgccgtgctcatccccaagccgaagaccgcgaggatcggg
ggccgggacctgcaggatgcggaaatcctggaatgggccaacggcgtgatccggaacatc
ttctcggaccaaccggtcactgtcgcgccgaccgggagctag
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