Polaromonas sp. JS666: Bpro_3003
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Entry
Bpro_3003 CDS
T00343
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pol
Polaromonas sp. JS666
Pathway
pol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bpro_3003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pol03400
]
Bpro_3003
Enzymes [BR:
pol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bpro_3003
DNA repair and recombination proteins [BR:
pol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bpro_3003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABE44917
UniProt:
Q128X5
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All DBs
Position
3164060..3166708
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AA seq
882 aa
AA seq
DB search
MGSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSW
AVPKGPSLDPAVKRMAVHVEDHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAG
LKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKEQDDHARPEQVFDVLQALPNS
VLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVK
SRLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLP
GLAKAVAQLDIRSAWLDGEIVVMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLD
LRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLIDSAQRLGLEGVIGKRAASPYV
SRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAE
TLRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRT
DKPARNILRETPTSPVTPRKGSDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVID
KTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVGGELFFQKHAQATAIPGIKLL
DPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWP
EMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVL
PQRFVAKSGPKNRVGRIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGA
HWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPPAH
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggttccgcggatttgctgaaaacctaccgcgccaggcgcgacttcaagcagacgccc
gagcccgccacgggaggcgagcgctccggcaaggcgttgaggtttgtggtccagaagcat
gcggcgcgcagcctgcactacgacttccggctggaactgcagggcacgctgaaaagctgg
gcggttcccaaggggccgagcctggatccggccgtcaaacgcatggccgtgcatgtcgaa
gaccacccgatggcctatgcaggctttgaaggcaccattccacccgggcagtacggtgcc
ggccacgtcattgtgtgggaccgcgggctctggacgccggtgggcaacccggccgcaggc
ctgaagaacggcaagctcaaatttgaactgcatggtgaaaagctcaagggaggctggacg
ctggtgcgcatgcacggccatgccggggaaagccatgaaccctggctgctgatcaaggag
caggacgaccacgcacgccccgagcaggtatttgatgtactccaggcgctgcccaacagc
gtgctttccggcaagcccttgcctggcaaggcagccaccggcacacagtgcgcccctcgc
gctgcgcgcaccagaaaagcagcgcctgaaagccacgccgggaagcacgccagaacaacg
gcggccagcgcacggtccggtaaaagcattcccaaaggcattcccgaaggcgcggtgaaa
tccaggctgcccggcacgctggccccggaactggccacgctggtcaaccgcgtgcctgcc
gacccgcaagactggatctacgaaatcaagtttgatggctaccggctgctcacccgcacc
gagggagactcggtgcgctgcatcacgcgcaacggcaacgactggaccgccaggctgcct
gggctggccaaagccgttgcacaactggatatacgctccgcctggctggacggcgaaatc
gtggtgatgaatgaccagggcgtgcccagcttcggcgcgctgcaaaacgcctttgacagc
gccagcacggccgacatccgctactacgtgttcgacctgccgttttacgatgggctggac
ctgcgccaggtgccgctggcgcagcggcgtgaaatcctgcgcacggccctgacgcgcaat
ccgcaggacagcatccgtttcagcgaggcgtttgaccagcccccgcaagacctgatcgac
tcggcccagcgcctgggcctggaaggcgtgatcggcaagcgcgcagcctcgccctacgtc
tcgcgccgctcgcccgactggatcaagctcaaaacccggctgcgccaggagtttgtgatt
ggcggctacaccgagcccaaaggctcccgcaccggcctgggagccctgctgctgggtgtg
catgatgcgcagggcaggctccggtacgccggcaacgtgggcacaggcttcaatgccgag
acactgcgcagcctcaaggagcggctgtcaacgctgcacagcgagcgcagcccgtttgcc
gcgctgccgacaggcgtcaaagggcaatgggtgaagccgcaactgctggccgaagtggcg
tttggcgaatggacccacggcggccacattcgacaccccgtgttccagggacttcgcacc
gacaaaccggccagaaacatcctccgtgagacgcccacatcaccagtcaccccccggaaa
ggctccgacatgccgcaagacgctgccacaccaggccccaccagccgcaaaacccgtgac
aaggcccctggcaaggctcctgagtccgtgcgcatcacgcatcccgaccgcgtgattgac
aagaccaccggcttcaccaagcaagccatggtggagcactacgccgccgtcgccccgctc
atgctgccgcacctcaaggggcgcccggttgccctggtccgcgcgccggcaggcgtcggg
ggtgagctgtttttccagaaacacgcgcaagccacggcgattcccggcatcaagctgctc
gacccggcgctggacccgggacatgagccgctgctcgagatcccttctgcagcggccctg
ctggaagccgcgcaagtcaatgtcgtggaattccacacctggaacgcgaccagccgcgcc
attcgcaagcctgaccgcatgaccttcgacctggaccccggcgaaaaggttggctggccg
gagatgcaggaggccgcgcagctggtgcactctcttctggatgagctgggactggccagt
tttctgaaaaccagcggaggcaagggcctgcacgtcgtggtgccgctgaggcgcagccac
gacttcgacacggtgaaggatttctcgcacgccattgtgaagcacttggcaggtgtcttg
ccgcaacgcttcgtggcgaagagcggccccaaaaaccgggtcggcaggatatttgtggac
tacctgcgcaacggtttcggcgccacgaccgtctcggcctggtcggcgcgcgcgcggcca
gggctgggggtctcggtaccggtggcgtgggatgaactggcttccctgaccggaggtgcg
cactggaccgcgacgacgataggcgggcggctggcgactggaaaccagccctggaaggac
tatggcgcccgcgccaatggcctggcggaggcgatgaaaaagctgggcttcaagccgccc
gcccattga
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