Polaribacter sp. BM10: BXQ17_08995
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Entry
BXQ17_08995 CDS
T04746
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pola
Polaribacter sp. BM10
Pathway
pola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BXQ17_08995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pola03400
]
BXQ17_08995
Enzymes [BR:
pola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BXQ17_08995
DNA repair and recombination proteins [BR:
pola03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BXQ17_08995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Syntaxin-6_N
Motif
Other DBs
NCBI-ProteinID:
AQS94189
UniProt:
A0A1U9L840
LinkDB
All DBs
Position
2015461..2018790
Genome browser
AA seq
1109 aa
AA seq
DB search
MSKQNIVNQFQTSASVSQIVAQLKQEKNHFQISNLVGSSLSFVISETFKKADKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAV
IVTYPTALFEKVVTKKELDKNTLKVTVGENLSLDFVNEVLFEYKFKRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRIEFFGDEIDSIRSFDVETQLSKEKLKKVSIMPNVENKTLQESRE
SFLKYIPSKTAIFTKNINLLSGNLDKFFSKAEDAFNDLSREINHAKPSELFCDGNFIKNQ
LQDFTLVDFGNQNKEEVAIEFNTIPQPSFNKQFNLLIDNLEEYHKADFTNYIFCANEQQA
KRFHDIFADSDKEVHYETIVFPLYQGFVDVDNKLVCYTDHQIFERYHKFRLKNGYAKKQA
ITLQELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLIYGERDILYVSIHSLHK
ISKFNGKDGKAPKIYKLGSGAWKKIKQKTKARVKHVAFNLIQLYAKRKLQKGFAFGPDTH
IQHELEGSFMYEDTPDQFTATQDVKNDMEKEQPMDRLVCGDVGFGKTEVAVRAAFKAVDN
GKQVAILVPTTILAFQHYKTFSERLKDFPVRIDYLNRFRTAKQKTEAINGVNDGSVDIII
GTHQLTNQRIKFKNLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLM
AARDLSVIKTPPPNRHPIESHVIRFSEETIRDAISYEISRGGQVFFIHNRIENIKEVAGL
LQRLIPSAKIGIGHGQMEGKKLEELMLGFMNGDFDVLVSTTIIESGLDVPNANTIFINNA
NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIAMK
DLEIRGAGDLLGGEQSGFINEIGFDTYQKILQEAIEELKENEFRELYPTDASKPKEFVKE
VQIDTDFEILFPDDYINSVTERLALYNKLSTLETEEELQNFETEIIDRFGEIPTQVEDLL
DSVRIKWLAKDLGLEKIVLKQKRMIGYFVSDQQSDFYQTEAFSRMLKYVQQNPKSCVMKE
KQTKNGLRLLITFIKIDTIQKAFGFLNKI
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagcagaatattgtaaatcaatttcaaacatctgcgagtgtatcgcagattgta
gcacaattaaaacaagaaaaaaaccattttcaaatatcgaatttggtgggatcttcgttg
tcttttgtgatatcagaaacttttaaaaaagcagacaaaccttatcttttaatttttaat
gataaagaagaagctgcctattatttaaatgatttagaacaacttttaggagacaaaaac
gtgcttttttatcctggttcttacagaagaccttatcaaatagaagaaacagataatgct
aatgttttattacgttctgaggttttaaatagaattaattctagaaaaaaacctgctgta
attgttacatatcctacagctcttttcgaaaaagtagttacaaaaaaagaattagacaaa
aacacattaaaagtaactgttggcgaaaacttatctttagattttgtaaatgaagttttg
tttgaatataagtttaagcgcgtagattttgtaacagaacctggtgatttttctgttcgt
ggtggtataatagatgttttctcattttctaatgatgaaccttatagaatagaatttttt
ggtgatgaaatagatagtattagatcttttgacgtagaaactcaactttctaaagaaaag
cttaaaaaggtttctataatgccaaatgtagaaaataaaactctgcaagaaagcagagaa
agttttttaaaatacatcccttcaaaaacagcaatatttacaaaaaacataaatttactt
tcaggtaatttagataaatttttctctaaagcagaagatgcttttaatgatttatcaaga
gaaataaatcatgcaaaaccatcagaattattttgtgatggtaactttataaaaaatcag
ttacaagattttactttggtagattttggcaatcaaaataaagaagaagttgctattgag
tttaacacgattccgcagccatcatttaacaagcagtttaatttactaattgataactta
gaagaatatcataaagcagattttaccaactatattttttgtgccaacgaacagcaagca
aaacgttttcatgatatttttgcagattctgacaaagaggtccattatgagaccatagtt
tttcctttataccaaggttttgttgatgttgataataagttagtctgctatacagatcat
caaatttttgagcgttaccataagtttagactaaagaacggttatgcaaaaaaacaagca
attacacttcaagaattaaacaaattagaaattggtgattatgtgacacacatggatcac
ggaattggaaaatttggtggtttacaaaaaattgatgttcaaggaaaaaaacaagaagct
attaaactaatttatggtgaaagagacatattatatgttagtattcactcattacacaaa
atttctaagtttaatggcaaagatggtaaagcgccaaaaatatataaattaggttctgga
gcttggaaaaaaattaaacagaaaaccaaagcaagagttaaacacgttgcctttaattta
atacaactttacgcaaaaagaaaactacagaaaggctttgcttttggtccagatacgcac
attcaacatgaactagaaggtagttttatgtatgaagatacaccagatcaatttacagca
acacaagatgtaaaaaatgatatggaaaaggaacaaccaatggatagattggtttgtggt
gatgttggttttggtaaaacagaagttgctgtaagagcagcttttaaagctgtagataat
ggtaaacaagttgcaattttagttcctacaactattttagcttttcaacattacaaaacg
ttttcagaaaggttaaaagattttcctgtaagaatcgattatttaaatagatttagaacc
gcaaaacaaaaaactgaagcaattaatggcgtaaacgatggttctgtagacataattatt
ggtacgcatcaattaacaaatcaaagaattaaatttaaaaatttagggcttttaattatt
gatgaagaacaaaagtttggagtggctgtaaaagacaaattaaaaacattaaaagaaaat
gtagataccttaaccttaactgcaacccctattcctagaacattgcaatttagtttaatg
gctgcaagagatttatcagtaattaaaacacctccacccaacagacatcctattgagagt
catgtaattcgtttttctgaggaaaccattagagatgccatttcttatgaaatttctaga
ggtggacaagtattttttattcataatagaatagaaaacattaaagaagttgctggtttg
ttgcaacgtctaattccttctgcaaaaattggtattggacatggacaaatggaaggcaaa
aaattagaagaattaatgcttggttttatgaatggtgattttgatgttttggtttctaca
actattatagaaagtggtttagatgtaccaaatgccaataccatttttataaataatgct
aataattttggattgtctgacttgcatcaaatgcgtggtagagttggtaggtctaacaaa
aaagcattctgttattttattacaccaccttatcatatgatgacagatgatgccagaaaa
cgtatagaagcactagttttattttctgatttaggaagtggtattaacattgccatgaaa
gatttagaaattcgtggtgcaggagatttattaggtggcgaacaaagtggttttataaac
gaaattgggtttgacacctatcaaaaaatattacaagaagctattgaagaattaaaggaa
aacgagtttagagagttatatccaacagatgcttctaaaccaaaagaatttgtaaaagaa
gtacaaatagacaccgattttgaaatattgtttccagatgattacataaattcagttact
gaaaggttagctttatacaacaaactaagcacattagaaactgaagaagaattacaaaat
tttgaaacagaaattatagacagatttggagaaatacccacacaggttgaagatttatta
gattctgtaagaataaaatggttggcaaaagacttaggtttagaaaaaattgtactaaag
caaaaaagaatgattggctattttgtatctgaccaacaaagcgatttttatcaaacagaa
gcgttttctagaatgttaaagtacgtacagcaaaatcctaaaagctgtgtaatgaaagaa
aaacaaactaaaaacggattgcgtttgctaattacgtttataaaaattgatacaatacaa
aaagcctttgggtttttgaataaaatttaa
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