Pollutimonas sp. M17: OEG81_12505 Help Entry OEG81_12505       CDS       T09676                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism poll  Pollutimonas sp. M17 Pathway poll03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:poll00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     OEG81_12505 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:poll03400]     OEG81_12505 (ligD) Enzymes [BR:poll01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      OEG81_12505 (ligD) DNA repair and recombination proteins [BR:poll03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      OEG81_12505 (ligD) BRITE hierarchy Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Motif Other DBs NCBI-ProteinID:  UYO92720 LinkDB All DBs Position 2659772..2662270 Genome browser AA seq 832 aa AA seqDB search MAKSDPLASYKAKRDFTRTAEPSEGGAAVASAPSFVIQKHWASRLHYDFRLELDGTMKSW AVPKGPSFDPTDKRMAVHVEDHPISYREFEGEIPEGQYGAGKVIIWDKGIWKPLGDARQG YRRGKLEFELHGHKLKGRWALVRMKGKSEKQDPWLLIKEKDEFQRPSAEFSVVDEMPDSV AREPDHPDPPAQARAGKKSPLPATLKPQLATLVDSAPSDAEAWLYEIKFDGYRLLARIQE GSIRLFTRNGNDWTAKLGALARQLESLQLPEGWYDGEIAVLDKNGLPDFQALQGAFDTTR TEKIVYYLFDLPFCGGRDLRQLPLVERRALLETVLRDAKATERHEAIRYSASFEESAKDI VVSACRMGLEGVIGKRKSSRYVSQRSTDWIKLKCSMRQEFVIGGYTDPNGSRSGVGSLLL GVHDETGALRYAGKVGTGFNSKMLNAIRQKLDALHAAKSPFSAASDIEKNAHWVRPELLA EVSFGQWTKTGRIRHSVFHGLRSDKPAIAIVRETSMPSEAVRKSDRSKSSAKGKEPVLDK LKVTHPERVVEASSGVRKIDLVRFYSLVGPLMMEHLKGRPVSLVRAPEGVKGQLFFQKHL ETATMTGVRQLPKKLDPGHDPLMEIATEQGLLSAAQMNVIEFHTWNAVKTVIARPDRMTF DLDPGKGVEWQAMQEAALLLRAFLQELELHPFVKTSGGKGLHVVVPLQRRHDWDTVKAFS HAIVLHMAATLPRRFAAKSGPRNRVGKIFIDYLRNGFGATTVCAWSARARPGMGVSVPIG WDEVEKLKSSDQWRVQNIHERLDRGNQPWAEYGKSAKALGKAMKILEFKPGE NT seq 2499 nt NT seq  +upstreamnt  +downstreamnt atggccaaatcagacccactggcatcctacaaggccaaacgcgatttcacgcgcacggcc gaaccgtccgaaggcggcgccgccgtcgccagcgcgccctccttcgtcatccagaagcac tgggcgtcccgcctgcattacgattttcggctggagctggatggcaccatgaaaagttgg gcggtccccaagggacccagcttcgaccccaccgacaagcgcatggccgtccatgtggaa gaccaccccatttcttatagagagttcgaaggcgagattccggaagggcaatacggcgcg ggcaaagtcatcatctgggacaagggcatctggaagccgctgggcgacgcgcgccagggc tatcgccgcggcaagctggaattcgagctgcacggacacaagctgaagggccggtgggct ctggtgcgcatgaaagggaagtctgaaaagcaggatccctggctgctaatcaaggaaaaa gacgagttccagcgcccttccgccgagttcagcgtggtggacgaaatgccggacagcgta gcgcgggagcccgatcatccggatccgcccgctcaggcgcgggcgggaaagaaatcgccc ctgcccgccacactgaagccgcagctggcgacgctggtcgactcggcgccctccgatgcg gaggcgtggctgtatgaaatcaagttcgacggctaccgccttctggcacgcatacaagag ggtagcatccgccttttcacccgcaacggaaacgactggaccgccaagctgggcgcactg gcccggcagctcgagtccctgcagcttccggaaggatggtatgacggggaaatcgccgtg ctcgacaagaatggtctgcccgatttccaggcgctgcaaggcgccttcgacaccacccgc acggaaaaaatcgtgtactaccttttcgacctgcctttttgcggcggcagggacttgcgc cagcttcccttggtcgaaaggcgcgctttgctggaaaccgtgctgcgcgacgccaaggcc accgagcgacatgaggcaatccgctacagcgcaagctttgaggagagcgcgaaagacatc gtggtgtcggcatgcaggatgggactggagggtgtcataggaaaaagaaaaagctcccgc tacgtgtcgcaacgctcgaccgactggatcaaactgaagtgcagcatgcgccaggagttc gtgatcgggggttataccgacccaaatggttcccgcagcggcgtgggctccctgctgctg ggtgtgcatgacgaaaccggcgccttgcggtatgccggaaaagtgggcaccggcttcaac agcaaaatgctgaacgccatcagacagaagctggacgcgctgcatgcggcaaagagtcct ttttcggcggcgtcggacatcgagaagaatgcccactgggtgcgccccgaattgctggcc gaagtctcgttcgggcaatggaccaagacgggccggatccgccattcggtattccatggg ctgcgcagcgacaagcccgccatcgccatcgtcagggagaccagcatgccctctgaagcc gtccggaagtccgatcgttccaaatcctccgccaagggaaaagagcctgtcctggacaag ctcaaggtcacccatcccgaacgcgtggtcgaagcgtcatcgggcgtcaggaagatagac ctcgtccgcttttacagcctggtggggccgctgatgatggagcacctcaagggccgcccc gtatcgctggtgcgcgcgcccgaaggcgtgaaaggccagttgttcttccagaaacacctg gagacggccaccatgacaggggtcaggcaactgcccaagaagctggatcccggtcacgat ccgctgatggagatcgcaacggaacaagggctgctgtccgccgcccagatgaacgtcatc gagttccatacgtggaacgccgtcaagaccgtgatcgcccggccggatcgcatgaccttc gatctggatcccggcaaaggcgtggaatggcaggccatgcaggaagccgccctgctcctg cgcgccttccttcaggagctggagttgcatccatttgtaaagaccagcggaggcaagggc ctgcatgtggtggtcccgctgcaaaggcgccatgactgggatacggtcaaggccttttcg catgccatcgtcctgcacatggctgccaccctgcctcggcgcttcgccgcgaaaagcggt ccgcgcaaccgggtcggaaaaatcttcatcgactatttgcgcaatggcttcggcgccacc acggtatgcgcctggtccgcgcgcgcgcgccccggcatgggcgtgtctgttcccatcgga tgggatgaagtcgagaaactgaaaagctcggaccagtggcgggtgcaaaacatacacgaa agactggatcgggggaaccagccgtgggcggagtacggcaaatccgccaaggctctgggc aaggccatgaagatacttgagttcaagcccggagaatga

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