Polaromonas sp. Pch-P: F7R28_11875
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Entry
F7R28_11875 CDS
T06273
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
poo
Polaromonas sp. Pch-P
Pathway
poo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F7R28_11875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poo03400
]
F7R28_11875 (mfd)
Enzymes [BR:
poo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F7R28_11875 (mfd)
DNA repair and recombination proteins [BR:
poo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F7R28_11875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QGJ19017
UniProt:
A0A5Q3HB85
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All DBs
Position
complement(2551391..2554891)
Genome browser
AA seq
1166 aa
AA seq
DB search
MQLPPLATGKRYTLPQPAGSADALLLARLGTREKAAGKLTAIITSDATTAQRLMDEIAFF
APDLRCALFPDWETLPYDTFSPHQDLISERLATLWRIQQRDKDTGADVVIVPATTALYRL
APPSFLAGYTFQFKVKQKLDETRLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSL
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDEARARFRSRWRELLDG
DPTKSRIYKDMGNGVATAGIEYYLPLFFEETATVFDYLGSDATVVLHGDLEPAFQRFWQD
TKDRYRLVRDAPDRPALPPESLFLGAEQFYARANDYAQLAIRAAVEDVADNAQFQKLGEM
AVVRGAEDPLAKFKGHVRNTAHRVLVLAESDGRRESLLDFLRASSVSPPAFDSLEDFQVS
DEKLGIATAALNTGFSWLEEGIDFITETELFAAGATVRRRNKKQEQVSDVEALIKDLSEL
NVGDPVVHSAHGIGRYRGLINMDLGQGTNADGTPLLQEFLHLEYADGATLYVPVSQLHLI
SRYTGVSAEEAPLHRLGSGQWEKAKRKAAEQIRDSAAELLNIYARRAAREGHAFRYSPGD
YETFANDFGFDETADQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAVTGG
KQVALLAPTTLLAEQHYQTLVDRFAKWPVKIAEMSRFRSGKEITAAIKGLADGTVDIVVG
THKLLSQDVKFERLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEG
LRDLSVIATAPQRRLAIKTFVRSENNGVIREAVLRELKRGGQVYFLHNEVETIQNRREKL
EEILPEARIAVAHGQMPERELERVMKDFIAQRYNLLLCSTIIETGIDVPTANTIVMSRAD
KFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQASQRLEAIQQMEELGSGFYLAMHD
LEIRGTGEVLGENQSGNMLEVGFQLYNEMLSEAVASLKAGREPDLLSPLSVTTEINLHAP
ALLPNDYCGDVHLRLSFYKKLATAKNTDQIDALLEEIVDRFGKLPAQAQTLIDVHRLRVI
ARPYGVVKVDAAPSGINITFKKDPPIDSMAIMHLIQKNRHIRLAGNDKLRIERELPEPKD
RAQMVRDILRSLGQPKTPSTPEATPA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcagctacccccactcgccaccggcaaacgctacaccctgccccagcccgccggttcg
gccgatgccttgctgctggcccgcctgggcacgcgtgaaaaagccgccggcaagctcacc
gccatcatcacgtcggacgccaccacggcccagcgcctgatggacgagatcgcttttttt
gcgcctgacttgcgctgcgcgctcttccccgactgggaaaccctgccctacgacaccttt
tcgccgcaccaggacctgatcagcgagcgcctggccacgctgtggcgcatccagcagcgc
gacaaggacaccggcgccgacgtcgtcatcgtgccggccaccaccgcgctgtaccgcctg
gcgccgcccagtttcctggcgggctacaccttccagttcaaggtcaagcaaaagctcgat
gaaacgcggctcaaggcccagctcacgctggccggctacagccacgtcacgcaggtggtc
agccccggcgaatacgcggtgcgcggcggcctgatcgacctgttccccatgggcagcctc
gtgccctaccgcgtcgacctgtttgacgacgagatcgacagcatccgcacgtttgacccg
gacagccagcgcagcctctaccccgtgccggaagtgcgccttttgccggggcgtgaattc
ccgatggacgacgaagcgcgcgcgcgctttcgcagccgctggcgtgagttgctcgacggc
gacccgaccaagagccgcatctacaaggacatgggcaacggcgtggctaccgccggcatc
gagtactacctgccgctcttctttgaagaaaccgccacggtgttcgactacctgggcagc
gatgccaccgtggtgctgcacggcgacctggagccggccttccagcgcttctggcaagac
accaaagaccgctaccgcctggtgcgcgatgcgccggaccgcccggcgctgccgcccgag
tcgctctttctgggcgccgagcagttttatgcgcgcgccaacgactacgcgcagctggcc
atacgcgccgcggtcgaagacgtcgccgacaacgcgcagtttcaaaagctgggcgaaatg
gccgtggtgcgcggcgctgaagacccgctggccaaattcaagggccatgtgcgcaacacc
gcccaccgcgtgctggtgctggctgaaagcgacggccggcgcgaaagcctgctcgacttc
ctgcgcgccagcagcgtcagcccgccagcctttgactcgctcgaagacttccaggtcagc
gacgaaaagctcggcatcgccaccgcggcgctgaacaccggtttcagctggctggaagaa
ggcatcgacttcatcaccgagaccgagctgtttgccgccggcgccaccgtgcgccgccgc
aacaaaaagcaggaacaggtcagcgacgttgaagcgctgatcaaggatctttccgagctc
aacgtcggcgacccggtggtgcacagcgcccacggcataggccgctaccgcggcctgatc
aacatggacctgggccagggcacgaatgccgacggcacgccactgctgcaggagtttttg
caccttgagtatgccgacggcgccacgctgtatgtgcccgtcagccagctgcacctgatc
agccgctacaccggcgtcagcgccgaagaagccccattgcaccgcctgggcagcggccag
tgggaaaaggccaagcgcaaggccgccgagcagattcgcgattcggccgccgagctgctc
aacatctacgcccgccgcgccgcgcgcgaaggccatgccttccgctactcgcccggcgac
tacgaaacctttgccaacgacttcggctttgacgaaaccgccgaccagcgcgccgccatc
catgcggtgatccaggacatgatcagcccgcgccccatggacaggctggtttgcggcgac
gtgggcttcggcaagacggaagtcgccctgcgcgcagcctttatcgccgtgaccggcggc
aagcaagtggccctgctggcgccgaccacgttgctggccgagcagcactaccagacgctg
gtggaccgcttcgccaaatggccggtcaaaatcgccgagatgagccgcttccgctcgggc
aaggagatcaccgcagccatcaagggcctggccgacggcaccgtcgacatcgtggtcggc
acgcacaagctgctgagccaggacgtgaagttcgaacgcctgggcctgctcatcatcgat
gaagagcaccgcttcggcgtgcgccacaaagaggcgatgaaggcgatgcgcgccgaagtc
gatgtgctgacgctcaccgccacgccgatcccgcgtacgctgggcatggcgctcgaaggc
ctgcgcgacctgagcgtgatcgccaccgcgccgcagcgccgcctggccatcaagaccttt
gtgcgcagcgaaaacaacggcgtgatccgcgaagccgtgctgcgcgaattgaagcgcggc
ggccaggtctacttcctgcacaacgaagtcgagaccatccagaaccggcgcgaaaaactc
gaagaaatattgcccgaagcccgcatcgccgtagcccacggccagatgcccgagcgcgag
ctggagcgcgtgatgaaggacttcatcgcccagcgctacaacctgctgctgtgctcgacc
atcatcgagaccggcatcgacgtgccgaccgccaacaccatcgtgatgagccgcgccgac
aagttcggcctggcgcagctgcaccagctgcgcggccgcgtgggccgcagccaccaccag
gcctatgcctatttgatggtgcccgacatcgaaggcctgaccaagcaggccagccagcgg
ctcgaagccatccagcagatggaggaactcggctcgggcttttacctggccatgcacgac
ctggaaatccgcggcaccggcgaggtactgggcgagaaccagagcggcaacatgctcgaa
gtcggctttcagctctacaacgagatgctcagcgaagccgtggcctcgctcaaagccggg
cgcgaacccgacctgctgtcgccgctcagcgtgacgaccgaaatcaacctgcacgccccc
gccctgctgcccaacgactactgcggcgacgtgcacctgcgcctgtccttctacaaaaag
ctggccactgccaaaaacaccgaccagatcgacgcgctgctcgaagaaatcgtcgaccgc
ttcggcaagctgccggcgcaggcgcagacactgatcgacgtgcaccgcctgcgcgtgatc
gcccgaccctacggcgtggtcaaggtcgatgccgcgcccagcggcatcaacatcaccttc
aagaaagacccgcccatcgattcgatggccatcatgcacctcatccagaagaaccggcac
atccgcctggccggcaacgacaagctgcgtatcgagcgcgagctgccggagcccaaagac
cgcgcgcaaatggtgcgcgacatcctgcgctcgctcggacaacccaaaaccccctccacc
ccagaagcaacacccgcatga
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