Polaromonas sp. Pch-P: F7R28_12750 Help Entry F7R28_12750       CDS       T06273                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism poo  Polaromonas sp. Pch-P Pathway poo03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:poo00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     F7R28_12750 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:poo03400]     F7R28_12750 (ligD) Enzymes [BR:poo01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      F7R28_12750 (ligD) DNA repair and recombination proteins [BR:poo03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      F7R28_12750 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Motif Other DBs NCBI-ProteinID:  QGJ19176 UniProt:  A0A5Q3HHG4 LinkDB All DBs Position complement(2745525..2748149) Genome browser AA seq 874 aa AA seqDB search MAARDLLKDYRAKRDFKRTPEPAHGGARADKALTFVIQKHDARNLHYDFRLELQGTLKSW AVPKGPSLDPSVKRMGVHVEDHPLSYAAFEGSIPAKQYGAGDVIVWDRGLWTPLGDPVKG LKSGKLKFELHGEKLKGGWTLVRMHGRGGDRQEPWLLIKEHDEHARSEKEFDVLKALPDS VLSGNPLPGKTGKTGKTPAKKTQSKESRVKAPAKKAADDIPEGATKAKLPETLAPQLATL VTRPPADPEGWVYEIKYDGYRMLARIEGRSVKLFTRNGNDWTTKLPKLAKAVAALDLPSG WIDGEIVVMNEQGVPDFGALQNAFDRASTANILYYVFDLPFFDGLDLRELPLTQRREVLC TLVTRHPQGSIRFSDAFDQAPQDLLDSARRVGLEGVIGKRADSAYVSRRSPNWIKLKTQL RQEFVIGGYTAPKGSRTGLGALMLGVHDEHGKLQYAGNVGTGFNDKTLDSLTARLQKLHA DRSPFAKLPAGVKGQWVKPRLLAEVAFGEWTHGGLIRHSVFQGLRTDKPATHIIREKPAA LAAGKGAAMPLAKKTPAAKPAAKTAAKPVPAALKSLRVTHADRVIDASTGLTKQDVVEHY AGVAALMLPHLKARPTSLVRAPSGIAGELFFQKHAEATSIPGIKLLDPKLDPGHAPLLEI PSVTALLSATQVNVIEFHTWNATTRSIDKPDRMTFDLDPGEGVGWPQVQEAAQLVRAFLD ELGLASFLKTSGGKGLHVVVPLKRQYDFDTVKDFSHAVVMHLAAVIPQRFVAKSGPKNRV GKIFADYLRNGFGATTVAAWSLRARPGMGVSVPVAWDELPSLTGGAHWTAQTLGARLAVG NQPWDAYEASRNSLGSAMKRLGFKPPRAGTTRKA NT seq 2625 nt NT seq  +upstreamnt  +downstreamnt atggccgcccgcgacctgctgaaagactaccgggccaagcgcgacttcaagcgcacaccc gaacctgcgcacggcggcgcgcgcgcggacaaggccctcacctttgtcatccagaagcac gacgcgcgcaacctgcactacgacttccgcctcgagctgcaaggcacgcttaaaagctgg gccgttcccaaggggcccagcctggaccccagcgtcaaacgcatgggtgtgcacgtggaa gaccacccgctttcttacgccgcctttgaaggcagcatcccggccaaacagtacggcgcg ggtgatgtgatcgtctgggaccgcggattgtggacaccgctgggcgacccggtgaaaggc ctcaaaagcggcaagctcaagtttgagctgcatggcgaaaagctcaaaggcggctggacg ctggtgcgcatgcacggccgcggcggcgacaggcaggagccctggctgctgatcaaggag catgacgaacatgcgcgcagcgaaaaagagtttgatgtgctcaaggcgctgcccgacagc gtgctatcgggcaatcctctacctggcaaaaccggaaaaaccggcaagacaccggctaaa aagacacagagcaaagagtcacgggtcaaggcgcctgccaaaaaagccgccgatgacatt ccggaaggcgccaccaaagccaaactgcccgaaacgctggcgccgcaactggccacactg gtcacccgcccgcccgccgaccccgaaggctgggtctatgaaatcaagtacgacggttac cggatgctggcgcgcattgaaggccgctcggtgaagctctttacccgcaacggcaatgac tggacgacgaagctgccgaaactggccaaggcggtggccgcgctggacttgccttccggc tggatagacggcgagattgtggtgatgaacgagcagggtgtcccggacttcggtgcgctg caaaacgcctttgaccgcgccagcaccgccaacattctttactacgtgttcgacctgccc ttctttgacggcctggacctgcgcgagctgccgctcacccagcggcgcgaagtgctgtgc acgctggtcacccgccatccgcagggcagcatccgcttcagcgacgcgtttgaccaggcg ccgcaagacctgctcgactccgcccgccgcgtcgggctggagggcgtgatcggcaagcgc gccgactctgcctacgtatcgcgccgctcacccaactggatcaagctcaagacgcagctg cgccaggaatttgtgattggcggctacacggcgcccaagggctcacgcaccggcctgggc gcgctgatgctgggcgtgcacgacgagcacggcaagctgcagtacgccggcaatgtcggc accggctttaacgacaagacgctggacagcctgacggcccggctgcaaaagcttcatgcc gatcgcagcccgtttgcaaagctgcccgccggcgtcaaaggccaatgggtcaagccgcgt ttgctcgccgaggtggccttcggggaatggacccacggcgggctgatccgccactccgtg ttccagggcttgcgcaccgacaaacccgccacacacatcattcgggagaaacccgccgcg cttgccgccgggaaaggagccgccatgcctctcgccaaaaagacccctgccgccaaaccg gccgcaaagacggccgccaaacccgttcctgcggcgctgaaatccttgcgcgtgacacac gccgaccgcgtgatcgatgccagcaccggcctgaccaaacaggacgtggtcgagcactat gccggcgttgcggcgctcatgctgccgcacctcaaggccaggccgacctcgctggtgcgc gcgccgtcgggcatcgcgggcgagttgttcttccagaagcatgccgaggccacctccatc ccgggcatcaagctgctggacccgaaactcgacccgggccatgcaccgctgctggagatt ccctccgtcaccgccctgctctcggccacccaggtcaatgtgatcgagttccacacctgg aacgccaccacccgttccatcgacaagcccgaccgcatgacctttgacctggacccgggc gaaggcgtgggctggccgcaggtgcaggaggccgcgcagctggtgcgcgccttcctggac gagctggggctggccagcttcctgaagaccagcggcggcaagggcctgcatgtggtggtg ccgctcaagcgccagtacgacttcgacacggtgaaggacttttcgcatgcggtggtgatg cacctggcggcggtgattccccagcgctttgtggccaaaagcggccccaaaaaccgcgtg ggcaaaatttttgcggactacctgcgcaacggcttcggcgccaccacggtggcggcctgg tcgctgcgggcccggcccggcatgggtgtgtcggtgccggtggcctgggatgagctgcct tcgctcaccggcggcgcgcactggacggcgcagacactcggagcgcgcctggccgtcggc aaccagccgtgggacgcctacgaagcgtcccgcaacagcctgggcagcgcgatgaagcgc ctgggcttcaagccgccgcgcgcgggcaccacacgcaaggcgtga

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