Populus trichocarpa (black cottonwood): 112324753
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Entry
112324753 CDS
T01077
Name
(RefSeq) disease resistance protein RPS6
Organism
pop
Populus trichocarpa (black cottonwood)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIR
NB-ARC
TIR_2
LRR_4
C-JID
LRR_8
AAA_16
NACHT
ATPase_2
AAA_14
LRR_3
Thymidylate_kin
AAA
nSTAND3
NTPase_1
Motif
Other DBs
NCBI-GeneID:
112324753
NCBI-ProteinID:
XP_024444907
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Position
17:827641..834037
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AA seq
1187 aa
AA seq
DB search
MASSSSSSSSSSTSTINLPKKHHVFLSFRGEDTRVGFTSHLHAALERKNILTFIDNDLRR
GEEISPSLVKAIEDSMLSVIIFSQNYASSKWCLDELLKILESRKVRGQIAIPVFYEVDPS
DIRKQSGSFGDVFAQLVKRKALKMEEEQCFRAALNEAANISGHDSRKIESESKFIEVIVE
DILNKLCKIFPVHPTNLVGIDEHVRKIESLLDMETQDVRIVGIWGMGGIGKTTIARAVYN
KICTKFEGFSFMANVREELKRRTVFDLQRRFFSRILDQKIWETSPFIKDRLRRKKVLIVF
DDVDSSMVLQELLLEQRDAFGPGSRILVTSRDQQVLNQEVDATYEVKALNHMDALQLFKS
KAFKKTCPTIDHIYLLGRMVTYTKGNPLALVVLGSALCDKNKEDWYSASNGLGQIQNVEI
LNVLRVSFDGLNTEQRSIFLHIACFFKGINRLHFTRILENKCPAVHYYISVLIDKSLVLA
SDNILGMHDLLQEMAYSIVHEESEDPGERSRLFDPEDIYKVLKENKGTKRVKGICLDMSK
SRKMRLKTDSFAGMNCLEFLIFYNPSYFEVEKNKVHLPYSGLEYLSNELRYFHWDGFPSK
SLPQDFSAENLVQFDFSESKVEKLWSGKQNLLNLKGINLSSSRYLTELPDLSKANNLEYI
NLSGCESLKRVPSSFQHLEKLKRLDLTDCHNLITLPRKIDSKCLEQLFITGCSNIRNCPE
TYADIGYLDLSGTSVEKVPLSIKLRQISLIGCKNITKFPVISENIRVLLLDRTAIEEVPS
SIEFLTKLVSLHMFDCKRLSKLPSSICKLKFLENFYLSGCSKLETFPEIKRPMKSLKTLY
LGRTAIKKLPSSIRHQKSLIFLELDGASMKELLELPPSLCILSARDCESLETISSGTLSQ
SIRLNLANCFRFDQNAIMEDMQLKIQSGNIGDMFQILSPGSEIPHWFINRSWGSSVAIQL
PSDCHKLKAIAFCLIVHHTVPLNDLLQEDKAINIKWQCHAKSNNCEHDDIIFKTECEIYN
FQDSKMRDSDHMLLWHENWKEDSFSKYSDKEITFEFYPKAKAKSFDRNTSEMELREIEKH
CKVKSCGVYHLFDENRHLFSISDEDLSDQEDDYYSLCSSSSSAEDSGDEIDHENGDLKSC
KTSPATSFFSHRKGYLLLLCFLTFAYFFLSWTSQFCFAPQFIPPPPT
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcttcttcttcttcttcttcttcttctacatcaaccatcaaccttccaaaa
aaacatcatgtcttccttagctttagaggggaagacacccgtgttggttttaccagccac
cttcatgcagctttggaacggaaaaacatcctaactttcatagataatgaccttaggcga
ggagaagaaatttctccatcacttgtaaaagcaattgaagactccatgctctctgtgatc
attttttcccaaaactatgcatcttccaaatggtgcttagatgagctattgaagattctt
gaaagcagaaaagttagagggcagattgctattccagtattctacgaggttgatccttct
gatataagaaagcaaagtggaagctttggagatgtatttgcgcaacttgtaaagaggaaa
gctttgaagatggaggaggagcaatgtttcagagctgctttgaacgaagctgccaacata
tctggccatgactcaaggaagatcgagtcagagtctaaatttatcgaggtaattgtcgaa
gatattctgaataaattgtgcaaaatcttccccgtccaccccacgaatcttgttggaatt
gatgaacacgtaaggaaaattgaatctttgttggatatggagacgcaggatgttcggatt
gtaggaatatggggaatgggtggtataggcaaaacaactatcgctcgagctgtgtataac
aaaatttgcaccaaatttgaagggttttcctttatggcgaacgtcagggaagaattaaaa
agacgcacagtgtttgatttgcaaagaagatttttctcgcgaatacttgaccagaaaatt
tgggagacgagcccttttataaaagataggcttcgccgaaaaaaggtgctcattgttttt
gatgatgtagatagttcaatggtcttgcaagaattgctactcgagcaacgtgatgcattt
ggtcctggaagtagaattctggtaacaagtagggatcagcaagtgctaaaccaagaggtt
gatgcaacatacgaggtaaaggcattgaatcatatggatgctcttcagctctttaaatcg
aaagccttcaagaaaacctgtcccacaattgatcatatatatttgttgggcaggatggtg
acctatacaaaaggcaatccactggctcttgtagttttgggctcagctctctgtgacaaa
aacaaagaggattggtacagtgcatcgaatgggttaggccagattcaaaatgttgaaatt
ctaaatgtgttgagggtcagttttgatggactgaatacggagcaaagaagtatttttctt
cacattgcatgtttcttcaaaggaatcaaccgactccattttacaagaatattagagaat
aagtgtcctgctgtgcattactatataagtgttctaattgataaatctctcgtattggct
tcggacaacatactagggatgcatgatttactacaagaaatggcttatagtattgttcat
gaagaatctgaggatcccggtgaacgtagcaggctgtttgatcctgaggatatctataaa
gtattgaaggaaaacaaggggacaaaaagagttaaaggcatatgccttgacatgtccaaa
tcaaggaaaatgaggttgaaaactgattcctttgcagggatgaactgtcttgaatttctc
atattctataatccctcttacttcgaggtcgaaaaaaacaaagtgcaccttccttactct
ggccttgaatatctttccaatgagcttagatatttccactgggatggattcccttccaaa
tctttgccacaggattttagtgctgaaaacctcgtccagtttgatttttctgagagcaag
gtagagaaactttggagtggaaaacagaatcttctgaatttaaaaggaatcaacctcagt
tcctctcgttatttgactgaattgccagatttatcaaaagctaacaatttagagtatata
aatcttagtggttgtgaaagtttaaaaagggttccatcgtcctttcaacatctggagaaa
ctgaaacgccttgatcttaccgactgccataatctaataactcttcctagaaagattgat
tcaaaatgtctcgaacaactttttataacaggttgctcaaatatcaggaattgtccagag
acttatgcggatataggatatttagacttaagtgggacttctgtagaaaaggtgcccttg
tcaatcaagttgagacaaatttctctgattggttgcaaaaatattactaagtttccagtg
atttcagaaaatataagagtgttgcttttggatcgaactgctatagaagaggtgccttca
tcaattgagtttcttacgaaacttgtgtctttacatatgttcgactgtaaaaggctatct
aaactcccaagcagcatctgtaaattgaaatttcttgaaaatttctatttatctggttgc
tcaaaacttgagaccttcccagaaatcaagaggcctatgaaatctttgaaaacactttac
ttgggtagaacagcaattaagaagctaccatcatcaattaggcatcagaaatctttgata
tttcttgagttagatggagcatctatgaaagagctactggagcttccaccttcattgtgt
attttatcagcaagggattgtgaatcattagaaaccatatcaagcggcactttaagccaa
tcgatacgtttgaatcttgcaaattgcttcagatttgatcagaatgcaataatggaagac
atgcaattgaaaattcagtctggaaatattggagacatgtttcagattctttcaccagga
agtgaaattccacattggttcattaatcgaagttggggatcttcagttgccattcagttg
ccctcagactgtcataagctcaaggcaattgctttctgcctgattgttcaccatacagtt
ccattaaatgatttgcttcaggaagataaagccataaacattaaatggcaatgccatgcc
aaaagtaataattgtgaacatgatgatatcattttcaagacagaatgtgagatatataac
ttccaggattcaaagatgcgtgactcggatcacatgttattgtggcacgagaactggaaa
gaagattctttcagtaaatactctgacaaagaaattacatttgaattctacccgaaagca
aaagcgaaatctttcgatcggaacacttcagagatggagttgcgtgagattgaaaagcat
tgcaaggtgaaaagctgtggggtctatcatctatttgatgagaatcgacatctattcagc
atttctgatgaggatttgagtgaccaagaagatgattactattctctttgttccagcagt
tcttctgctgaggattcaggtgatgaaattgatcatgaaaatggtgatttaaaatcctgc
aagactagcccagcaacgtcttttttctcccaccgaaagggttatctccttcttctatgc
ttcttgacatttgcttatttctttctctcatggacatcccaattttgttttgcacctcaa
ttcattcctccaccaccaacttga
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