Populus trichocarpa (black cottonwood): 112326647
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Entry
112326647 CDS
T01077
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
112326647
Enzymes [BR:
pop01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
112326647
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
112326647
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GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Flavodoxin_5
Motif
Other DBs
NCBI-GeneID:
112326647
NCBI-ProteinID:
XP_024451648
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Position
2:24882736..24887646
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AA seq
636 aa
AA seq
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MPLTSTPARLTLLALLSATTIYCFYKSRRLKKISLNPNPNKPKLFFISQTGTSKTLAHRL
HNLLASNNLHFDLIDPQNYEPEDLFKEKLVIIIASTWEDGKPPQNAKFFANWLAESADDF
RVGSLMLSECKFAVFGVGSRAYGETFNAVAKDFSRRLRDLGAKEVVGVGEGDVDGGELDG
VFEEWSGRLARVLKGESVENGEVCGNGVVVIDESDDDEDDGGVESDIIDLEDIAGKGPSR
RSLAVAQSNGKLNGENGKLNGQKEMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRG
RGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPLEIVNSAI
DLHTKMIKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINTLVDELHRRQISTFL
VTNAQFPEKILMLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKSLKEKQQRT
VYRLTLVKGWNTEDLDAYFNLFSVGQPDFIEIKGVTYCGSSATSKLTMENVPWHSDVKAF
SEAMALKSKGEYEVACEHVHSCCVLLAKTEKFKVDGQWFTWIDYDKFHDLVASGKPFDSK
DYMAATPSWAVYGADEGGFDPDQSRYRKERHHKTNH
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgccgctaacctccactcccgctcgcttaactctccttgctctcctctccgccaccaca
atctactgcttctacaaatctcgccgcctcaaaaaaatctccctaaaccctaaccctaac
aaacccaaactcttcttcatctcccaaactggcacttccaaaaccctagctcatcgtctc
cacaatctcctagcctcaaacaatctccattttgacctcatcgaccctcagaattacgag
cctgaggacctcttcaaagaaaaattggtcataattatcgcttccacttgggaagatggt
aaaccgcctcaaaatgccaaattcttcgcgaattggcttgccgaaagcgctgacgacttt
cgtgtcggttcgttgatgctctcggaatgtaagttcgcggtttttggtgtaggaagtaga
gcttatggcgagacatttaatgctgtggctaaagatttttcgcggcggttgagggatttg
ggagcgaaggaggttgtgggagttggggagggtgatgtggatggtggtgaattggatggg
gtttttgaggagtggagtgggagattagctagggttttgaaaggagagagtgtggagaat
ggagaggtttgtggaaatggagtggttgttattgatgagagcgatgacgatgaggacgat
ggtggggtggaatcggacattattgatcttgaagatattgcgggtaaagggccgtcaagg
aggtcacttgccgtggctcaaagtaatgggaaattaaatggagagaatgggaaattgaat
ggtcaaaaagaaatggtgactccggtgatcagagcaagcttagaaaagcagggatacaaa
atcattggttcgcatagtggtgttaagatttgtagatggaccaaatcacaacttagaggg
cgaggaggttgctacaagcactctttttatggaatcgaaagtcataggtgcatggaggca
actcctagtttggcatgcgccaacaaatgtgttttctgttggagacatcacacaaatcct
gtaggaaagagttggcagtggaaaatggatgatcctctggagattgtgaattctgccatt
gatctgcatacaaagatgattaagcaaatgaaaggagttcctggtgttactcttgagcga
ttgaatgaaggtctctctcccaggcattgtgctttatcacttgttggtgaacctattatg
tatccagagattaatacactagtggatgagctgcaccgaaggcagatatccacatttcta
gtaacaaatgcacagttccctgagaagattctaatgctgaagcctgtaacccagttatat
gtcagtgtagatgctgcaacaaaggaaagcctgaaggcaattgatagaccactttttggt
gatttttgggagcgatttattgattctttgaaatccctcaaggagaagcaacaacggact
gtttatcgtctgacactggttaaagggtggaacacagaggatttagatgcttattttaac
ctctttagcgttggacagcctgatttcattgaaattaaaggcgttacctactgtggatcg
tccgccacatcaaagttgacgatggagaatgtgccttggcattctgatgtgaaagctttc
tcagaggccatggctcttaaaagcaaaggggaatatgaggttgcttgtgagcatgtccac
tcatgttgtgtccttttggcaaaaactgagaagttcaaagttgatggccaatggttcact
tggatagattatgacaagttccatgatctggttgcttctggtaaacctttcgatagcaag
gactacatggctgccacaccatcttgggctgtttatggagctgacgaaggtggatttgat
ccggatcaatctcggtataggaaagagcgacatcataaaaccaaccactga
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