Populus trichocarpa (black cottonwood): 127904426
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Entry
127904426 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC127904426
Organism
pop
Populus trichocarpa (black cottonwood)
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Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH_2
RT_RNaseH
Retrotrans_gag
Ty3_capsid
gag-asp_proteas
Asp_protease_2
RVP_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
127904426
NCBI-ProteinID:
XP_052303850
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Position
16:complement(14172867..14178848)
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AA seq
1266 aa
AA seq
DB search
MGTMEVITRQCETFTNLKMLCINATSQYSIKLFYGDSCQRLRQQLRADRLFITRAATFEV
PRPGGAIPRQLGNLSRLVLLDLSYTDFLEAESLMWLSYLLSLKHLDMSGSNLSQAVDWFQ
AINSLPSPLSLHLSYCQLSLVVPPSTPFHANHSSASHADIDLSINSLPSSNDPRQFLLYS
FSLYRPWRHDVGHEEVNTLPLRQVVSEPTLSAKFLMARDDIGSSRSTDDDQRIRAIATGV
VTAAINDIRPLFDGVPLLQAQLEEVLQRLEALSPNGNRIDDQRRGRADEITHGSTSLTRN
PENIPQYQNTRSLPVMSSTNCQVIETEDRAPRRTQGDRDYKLNVEMPTFKGTQNVDEFFS
WIDEVETRFGVMDCSEDRKLKVVANKLRGSAAAYWKYLKNKRVLDGKPPIATWEKMKSKF
MSKFLPPDYEQRLYVQLQNCKQGNRTVEEYIDEFIRLNSRNLLPDNENMQIARFRGGLKQ
DIQDQMKMLNTFTLGQAFDLARKAEEPIRAPSVRPRFTNQQYQAGPSRVTPTTEPSNGTV
ATENRPRRAAPQQAPNPYARPMPSLCYRCHQSGHRSNQCPQRPAVNFVEGDYEVEGDDDH
NTEVVDGIEECEEDEFIGMVMRQPCDIQKKKLAASNQHSLVENLKAEKGGDEKINYIVQR
VFLTPKKGPEISTRHQVFRTNAIVNGVIAKVVIDTGSSENLVSKELVRRLKLTTEKHPQP
YGLRWIRKVEGAADVVNEVCRVPLSIGKNYQDEIVCDVVVMDACQILLGRPWQYDVDIGF
KGKTNTYEFWWKGKHIFLKPPILKTGARQEEGESFLTIATKHVAEECQACALLAQEEDTT
EETIPEKVLPLVTEFSDLAPTELPMGLPPMRDIQHHIDLIPGASLPNLAHYRMSPQQHKI
LQDQVDDLLCKGYIQESKSPCAVPALLVPKKDGTWRMCIDSRAINRITIRYRHPIPTIQD
MIDQLGGAKVFSKIDLRSGYHQIRIRPGDEWKTAFKTREGLYEWTVMPFGLSNAPSTFMR
LMNQVLRPFSCKFVVVYFDDILIYSPDEETHLRHLREVLIVLRKNHLYVNKKKCNFLQDR
LVFLGFVVGKDGVQVDETKVKAIREWPTPATVADVRNFHGLATFYRRFIRNFSSLAAPLT
ECKKKGGFRWEEEQETSFAILKEKLSTAPVLALPDFDKLFEVDCDASGKGIGAVLSQEGR
PVEFFSEKLSAARLRWTTYEKEFYAVFRALMHWQHYLIQKEFVLYSDHQALKFINNQHHM
NNMHAR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaatggaagtaataaccaggcaatgtgaaacttttactaacctaaagatgctt
tgcattaatgccacttctcagtattccatcaaactcttctatggagactcttgccaacgt
ctacgtcaacaattgagggcagatagactcttcattactagagctgcaacatttgaggtg
cctagacctggaggagctattcctcgtcagttgggaaatctctccaggttggttttgcta
gatctcagctacaccgactttctcgaagctgaaagtcttatgtggctttcttatcttctt
tctttgaagcatcttgatatgagcggttcaaatctcagtcaggctgtagattggttccaa
gcaattaatagccttccttctccgctcagcttgcatttaagttattgccaactctctctg
gttgttcctccttcaacccctttccatgccaatcactcctctgcttcacatgcagacatt
gatctttctatcaacagtcttccatcttccaatgatcctaggcagtttttgctctacagt
ttttcgctctacagaccatggagacatgatgtaggacatgaggaagttaatactcttccg
ctacgtcaagtggtatcagagcctacgctctcagcaaaatttctgatggcacgcgatgat
attgggagtagtcgttcgactgacgacgatcagcgaataagggcaatagcaaccggggtt
gttactgccgccatcaatgacatacgtccactattcgatggggttccgttactgcaagct
cagcttgaagaggttcttcagagattggaggcgttgtctcctaatggcaacaggatagac
gaccaacgacgaggaagggcagatgagatcactcatggctcgacgtccttgacccgtaat
cctgaaaacataccacaataccaaaacacacgatcattacctgtgatgtcgtcaacaaac
tgtcaagttattgaaactgaagatcgggctccaaggagaacccaaggtgaccgagattat
aaactcaatgtggagatgccaaccttcaaaggaacacagaacgtggatgagtttttctct
tggatcgacgaggttgagacgagatttggggtgatggactgctcggaggatcggaaactc
aaagtagtggccaataaactaagaggatcagctgcagcttattggaagtacttaaaaaac
aagcgagtgctagacggaaaacctccgattgcaacatgggagaaaatgaagagcaagttc
atgagcaagttcttacctcctgattatgagcaacgtttatatgttcaattacagaattgc
aaacaggggaatcggaccgtggaagaatacatcgacgagttcattcgattaaattcacga
aacttactaccagacaatgaaaacatgcaaatcgcaaggtttagaggaggtttgaaacag
gacatacaagaccaaatgaagatgcttaatacattcacactcggacaggctttcgatttg
gcacgaaaggctgaagagccaatccgagcaccatctgtacgacccaggtttacaaaccag
cagtatcaagcaggaccaagcagagtgactcccacgactgaaccaagcaatgggaccgtg
gctactgaaaatcgaccaaggagagctgcaccacaacaagcaccgaacccctatgctaga
ccaatgccctcgctatgttaccgatgtcatcaatcaggacaccgttcgaatcagtgtccg
caaagacctgctgtcaactttgtggaaggtgactatgaagtagagggggacgatgatcat
aacacagaggtggtcgacggtattgaggagtgtgaagaggacgaatttattggaatggtg
atgcgtcaaccgtgtgatattcaaaaaaaaaaattagcagcatcaaatcagcacagtttg
gtggaaaatctgaaagcagaaaaaggtggggacgaaaaaatcaattacatagttcaaagg
gtcttcttaacgcccaaaaagggaccagagatttcaactcgccatcaggttttccgaacc
aatgccattgtcaatggagtgatagcgaaggtagtaatcgacacaggaagttctgagaac
ttagtgtccaaagaactggttcgaaggttgaaactgaccactgagaaacacccgcagccc
tatggtctacgttggattcgaaaggtggaaggcgctgctgatgtagtcaatgaagtatgt
agagtaccgttgtcaattggtaagaattaccaagatgaaattgtgtgtgatgtagtggtg
atggatgcttgccaaattctgttaggaagaccatggcagtacgatgtggacatcggcttc
aaaggaaaaaccaatacctatgaattctggtggaaagggaaacatatctttttgaaacca
cctattttgaaaacaggggcacggcaagaggagggagaaagtttcctaaccatagcaaca
aagcatgtggctgaggaatgccaagcttgtgcgttactagctcaagaggaggatacaaca
gaggaaaccatacctgaaaaggtcctccctttagtgaccgaattttctgatctggcacct
acagagctaccaatgggtttgccaccaatgagggacatacaacatcatattgatctgatt
ccaggagccagcttaccaaacctagcacactatagaatgagcccccaacaacacaagata
ttacaggatcaagttgatgacttgttatgcaaaggatatatccaggagagcaagagcccg
tgtgcagtaccggcattactagtacccaagaaagatggcacctggcgaatgtgtatcgac
agccgagcaatcaatagaatcaccatccgttaccgacatccaatacccactatccaagac
atgatcgatcaattgggaggggcaaaagtgttctccaaaatcgatctacgaagcgggtac
catcaaattcgaattagacctggggatgagtggaaaactgcgttcaaaacacgcgaaggg
ctgtacgaatggaccgtgatgccgttcggtctctccaacgctccaagcacttttatgaga
ctcatgaatcaagtgctgagaccgttctcatgcaaatttgtcgtcgtttacttcgacgat
attcttatttacagccctgatgaggagacacacttgagacacctgagggaagtgctgata
gtcctgcggaaaaatcacttgtacgtgaacaaaaagaaatgtaacttcttgcaagaccgg
ctggtcttcttggggtttgtcgtgggaaaggatggggttcaagtggatgagaccaaggtt
aaggccattcgtgaatggccgacccctgcaactgtagcagacgtgcgaaacttccatggg
ttagcaacattctaccgaaggttcattcgaaacttcagcagcttggcagcaccattgacc
gagtgcaaaaaaaaaggtggtttccgttgggaagaagagcaagaaactagtttcgctata
ctgaaagagaaactaagcacggcacccgtcctcgcgttaccagattttgacaaattattc
gaggttgattgtgatgcttcagggaagggaattggggccgtgttatcccaagagggcaga
ccggtggaattctttagtgaaaaattaagcgctgcaaggctgcgatggacaacttacgag
aaagaattttacgctgtctttcgagctctcatgcattggcaacattacttgatccaaaaa
gaattcgtgttgtacagtgatcatcaagctctgaaattcatcaacaaccaacaccacatg
aacaatatgcatgcccgctag
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