Populus trichocarpa (black cottonwood): 18097674
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Entry
18097674 CDS
T01077
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18097674
09124 Replication and repair
03420 Nucleotide excision repair
18097674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18097674
03400 DNA repair and recombination proteins [BR:
pop03400
]
18097674
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18097674
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18097674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
18097674
NCBI-ProteinID:
XP_024455344
LinkDB
All DBs
Position
4:10438830..10446709
Genome browser
AA seq
412 aa
AA seq
DB search
MTNKIAEKRRQQEEDDEEDGDLDGWGERNYSDERSWEALQEDESGLLRPLDNKAMYHAQY
RRRLRSLSTASNSQRIQKGLIRFLYVVLDLSRAASVMDFRPSRMAVVAQNVEAFIREFFD
QNPLSQIALVTIKDGVAYSLTELGGSPESHIKALMAKLECSGDSSLQNALELVHEYLDKI
PSYGNREVLILYSALTTCDPGDIMETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLY
SVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGY
ICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKT
CFGCQQSLVNPGNKPSLQVACPKCKQYFCLDCDIYIHESLHNCPGCESLRAS
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaaaattgctgaaaaaagaagacagcaagaagaagatgatgaagaagatggt
gatctcgacggttggggagagagaaattattctgatgagagatcttgggaagctttacaa
gaggatgagtctgggctccttcgtcctttggataacaaagcgatgtaccatgctcagtat
cgccgtcgccttcgttctctttctactgcttctaattcccagcgtattcagaaagggctc
attcgctttctctacgttgtcctagatctctcaagggctgcatcggtgatggattttcga
ccaagcagaatggctgtggttgcgcaaaatgttgaggcgtttataagggagttttttgat
cagaatccacttagtcagattgctttggttactataaaagatggggttgcttattcttta
acggagcttggtgggagtcctgagtctcatattaaggctttgatggctaagctggaatgt
tcaggtgattcgtcactacagaatgcattggagcttgttcatgagtatcttgataaaatt
ccatcatatggtaatcgtgaagttctcatcttatattctgcccttacgacctgtgatccg
ggagatataatggagacaatccagaaatgcaagaagtctaaaatgagatgctcagttatt
ggcctctctgctgaaatgttcatatgcaagcatctctgccaagaaactggtggattgtac
tctgttgctttggatgagagccactttaaagagttaatattggagcatgcaccccctcct
ccggcaatagcagaatttgcaatagctaacttgatcaagatgggtttcccacaaagagca
gcagagggttccatctcgatatgttcttgtcataaagaatcgaaagttggtgaggggtat
atttgtccaagatgtaaagcgcgtgtgtgtgagcttcctaccgaatgccgtatttgtggg
ttgacacttgtttcttcaccccatttagcaaggtcgtaccatcatctctttcccatagca
ccatttgatgaggtgaaaccatcacgtcaaaatgaaccacatcgtagatcacagaaaact
tgttttggttgccaacaaagccttgtcaatcctggcaataaacccagccttcaagttgct
tgtccaaaatgcaaacagtacttttgccttgactgtgacatttacattcatgagagcctg
cacaattgcccaggttgcgagagccttagagcttcatag
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