Populus trichocarpa (black cottonwood): 18098334
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Entry
18098334 CDS
T01077
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18098334
03015 mRNA surveillance pathway
18098334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18098334
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18098334
mRNA cycle factors
P-body specific factors
18098334
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
18098334
NCBI-ProteinID:
XP_006385051
UniProt:
A0A3N7FT70
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Position
4:complement(22991894..22999553)
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AA seq
520 aa
AA seq
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MKGGGQSDKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYI
DFKRPEDVIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEY
LEFLELIAKPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRILS
NGKLSRRAGGSGSPSSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQ
LSNAVTLGSGSGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSD
RNIISSTALKSQRRETSGRMIRSILLNKDSRHIRSSGVHSEPQMQTSNLEKEKRPPRPPH
AQLGLKDANGTPDDKVVGNDLHGFPNEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESL
LSSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSGRGNHSSLDNGSHKHFGRRGP
SHIVRDADGSTVEAKTPKRGGSSGYGSHEKQVWVQKSTGS
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtggtggtcagtctgacaagaccaaagtggtggtccgccacttgccgccgggg
atttctcagccgatgtttgtcgagcaaatcgatgttgctttctctggccgctacaattgg
ctctcctatcgtcctggcaacaacagccagaagcatcaatcatattctagagcctatatt
gatttcaaaaggcctgaggatgttattgactttgctgagttctttaatggccacatattt
gttaatgagaaaggcactcagtttaaagctattgttgagtattctccttcacagcgcgtc
ccaaaacagtggtctaagaaggatggtcgggaaggcaccatatcaaaagatcctgagtat
ttggagttccttgaattaattgcaaagcctgtcgagaatcttcccagtgctgaaatacaa
ctggagagaagagaagcagaaagagctggtgctgcaaaagatgctcccattgtcacacct
ttaatggactttgttcgacagaaaagagttgctaagaatggacctcggaggatattgtcc
aatgggaaactgagcagaagggctggtggcagtggaagtcctagttcatcctcattgaaa
cggggttctgagaagaagagaatttcaacaacaatgtatgttttaagggacactgcaaaa
agcacaagtggaaaagacaaatcaacttatgtgcacgttcccaagcgagatgatcagcaa
ctttctaatgctgtaactttgggttctgggtctgggactgcagtattagaagatgaaagc
gtagtttctggaattactgattctgggaagaagaaaatcctgcttctgaaagggaaggag
aaggaaatctcactggttactggcaccatgtctcagcaacagagcatatcatcttcagat
agaaatataattagttcgactgctctaaagagccagcggcgtgaaaccagtggaaggatg
atcagaagcatactgttaaacaaggattcacgtcatattcgatcctctggagtccattct
gagccacagatgcaaacctcgaatctagagaaggaaaaacgtcctcctcggcctccacat
gcacagttgggtttgaaggatgcaaatggaacaccagatgacaaggttgttgggaatgat
ttgcatggttttccaaatgagaagcaggaaaagcgcaccagaaataaggatagacctgat
cgtggagtgtggactcctctccgcagatcagatggatcctatgcaagtgatgaatccttg
ttatcatctgcaagtcaatccacacagtcggtgtttgattcttcacaaggaaaccatggt
gatgtaaaagttgactccttgaatttaaggagtggagaagtaaaagttcttggaagtggg
cgtggtaatcattcttctttagataatggatcacataaacattttggtcgtcggggacca
tcacatattgtgagggatgctgatggctccactgttgaggcaaaaactcctaaaagaggt
ggttcttctggttatgggtcccatgagaagcaagtctgggttcaaaagtcaactggttct
tag
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