Populus trichocarpa (black cottonwood): 18100071
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Entry
18100071 CDS
T01077
Name
(RefSeq) DNA glycosylase/AP lyase ROS1 isoform X2
Organism
pop
Populus trichocarpa (black cottonwood)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_DME
Perm-CXXC
HhH-GPD
MPTase-PolyVal
EndIII_4Fe-2S
Motif
Other DBs
NCBI-GeneID:
18100071
NCBI-ProteinID:
XP_006381317
UniProt:
U5GA53
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All DBs
Position
6:complement(9066090..9077332)
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AA seq
1811 aa
AA seq
DB search
MDVGRQNQKESWIPQSHFRHILPRVIYTDRQGNQLDQASSSEIKGLSGLGECCPPSSSNW
EAAARGAEKGSAGNDYVETSRERSTGNTATWNPMSLDDPLLALADAASREHLNPWIIGNY
TQEPKWGEANAFPAETTSQFAPVTPDKGMKVESKKIIEMQNLCTHSRNQEFSDDGIVSRG
ADASGLQTDEELLQRATNSSFAVGSPVLKENHNPDRRDSDVIDLNRTPQQKPRRKKHRPK
VINEGKRKGPQKSTTPKSAASTEKPTGKRKYVRKKALGKAPASSPAEANGQSADPKIIEQ
AKKSCRRALNFDIERQPRDKSSKCSPPFDLDSKPEAQTSAAINQSKSTVFLGRGIEVMVE
TTQAGIAYDLTHSINQMLKNYVSLRDKEAPSTLFPAQTSEQQGKQDGNLQEKGVDQGIAH
DVQEDTAQITPISPNGSNCSTSTTSTLEGQASRSKRKHSEQPDTCSTNLTGIHYNSLNAY
QTMPSLLFRKKKRSEKGQTPATSCTSSSVTATKDIAIVETTCPQKDPERDPFTPNINCWI
SAAPRNGLPGKHVEERIDLLNDLQTFGYSINQTTRSTKKRSRCPTKTRDLASVTRIPGCA
LHPTNRNRLVPVDCNGQQVGNSHRPHMSVEAVLAEMNGTWTTKKRTKKRASLVNSGSYSI
NAVPYHGKIVVYNQHKFSAKALGAHPEEMWKQMFSVDSIVEQLKHLDIKRESNDIAFEER
NALVHYNIGDDMRNALVLYKRDGTVVPYDGSFGSIRKRRPRPKVDLDQETNRVWKLLMGN
INSEGIDGTDDEKAKWWEEERAVFCGRSNSFIARMHLVQGDRRFSPWKGSVVDSVIGVFL
TQNVSDHLSSSAFMSLAARFPLKSKNKPCYDERTSLVIEKPIEFIPDSEEGIRWNEVSNQ
SICGQSSLTIHDIEPDEEQEVVKSSESSESSTGIVTSETEPHTFSQLMASRSTIETSMTR
RVSYMVEEGTQIIDGISSQNSVISGQNSVNSPIGQASEKKESCSENISEGEYLTDGSKLN
NYNDCRSFMELLRKVGSPLMQDAYSQGNGKMDSLNDHKSPIGVSMVASSNCYWHLTSNSG
AVKVDCFDMIPKETQYGDIAKNKKEDSAKDHNALAVETASQITDQNKLTLINQEASRSPM
SNNQSCIDIQKDKHTSVQSTAMPVEDPKVTDNSLIQMQNNYLQKNQYLQNLSGETTHITG
STSAFDRQQKNRQKTTESEMIELGYSQSKELNEMKAATRKAKSRRVGNEIRDDVDWDALR
KEAEANGKREGTENTMDSLDWEAVRCADVNEIANTIKERGMNNILAERIKNLLNRLVREH
GSIDLEWLRDIPPDKAKEYLLSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWV
PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPN
CNACPMRGECRHFASAFASARLALPGPEEKSIVSATENISGQNPAVDAAQLPLPLPLPLP
QTAKQSEGSQQPEASRLAESKSRITDYEPIIEEPSSPEPVSTQVTENDMEDTFCEDPDEI
PIIKLNIEEFTQNLQNYMQENMELQEADMSKALVALTAEAASIPVPKLKNVSRLRTEHQV
YELPDSHPLLQRLDRREPDDPCSYLLAIWTPGETANSIQPLERSCSLHECGKLCDEKTCF
SCNNIREENSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRAWIW
NLPRRTVYFGTSIPTIFKGLTTAGIQHCFWRGYVCVRGFDQKTRAPRPLMARLHFPASKL
TQTKKGDISGR
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcggcaggcagaaccaaaaggagtcatggattccacaaagtcattttaggcat
atcctacctcgtgtgatctacacagacaggcagggaaaccagctagaccaagcaagtagt
tcagaaataaaggggttatctggattgggtgagtgttgtcctccctccagttccaattgg
gaggcggctgctagaggtgcagaaaagggcagcgccggtaatgactatgtcgaaacatcc
agagagcgctccactggtaatacagctacatggaaccctatgtctttggacgaccctctg
ttggctcttgcagatgcagcttccagggaacatttaaatccatggattattggcaactac
acccaggaacccaagtggggggaggcaaacgcattccctgccgagaccacctcccagttt
gctcctgtaacgccagacaagggcatgaaagtggagtccaaaaagatcatagaaatgcaa
aatttatgcacacattcaagaaatcaagaatttagtgatgatggaattgtttccagggga
gctgatgccagtggcctccaaactgatgaagaactcctacagcgagcaacaaattcatcg
tttgctgttgggtcccctgtgttaaaggagaatcacaaccctgacaggagagacagcgat
gttattgacctgaacagaacaccacagcagaaaccaaggaggaaaaagcacaggcccaag
gtcatcaacgaaggcaaacgcaaagggccacaaaaatcaacgacccccaagtctgctgct
tctactgaaaagccaactggtaagagaaagtatgttcgaaagaaggcgctcggtaaagca
ccagcaagttccccagcagaagcaaatggacagtctgctgatccaaagataattgaacag
gccaagaagtcttgcaggagggccttaaattttgatatagaaaggcagcctagagacaaa
agctctaaatgcagtccaccttttgacttagattctaaaccagaggcacaaacaagcgca
gcaataaatcaatcaaaatcaacagtgtttcttggtcgtggaattgaagtgatggtggaa
accacacaagcaggcattgcctatgaccttacccattctataaatcaaatgcttaaaaat
tacgtatcattgcgggacaaagaagcaccaagcacattgtttcctgcccagactagtgaa
caacagggcaaacaggatggaaatttacaagagaaaggggtagatcaagggattgctcat
gatgtacaggaagacacggcacaaatcactccaataagtcctaatggctccaattgcagc
accagcacaacttcgactttggaaggacaggctagcagatcaaagaggaagcattctgaa
caaccagacacctgcagcacaaatctaactgggattcactataattctttgaatgcttac
caaaccatgccttcactactatttcgaaagaaaaagaggtcagaaaagggacaaactcca
gccacatcatgcacatcatcctcagtgactgctacaaaggacattgcgatagtagaaaca
acatgcccacagaaggatcctgaaagagatcctttcacacccaatatcaactgttggatt
tctgctgctcctcgtaatggacttccaggcaagcatgtagaagaaagaatagatcttctc
aatgacctgcaaacttttggctatagcataaaccagacaacaagatcaaccaaaaaaagg
tccagatgtcctactaaaactcgagatctggcttcagtgaccagaattccagggtgtgca
ttgcacccaacaaaccgaaacagacttgtaccagtggattgtaatgggcagcaagtagga
aactcacacagacctcacatgagtgtagaagccgtgctggcagagatgaatgggacatgg
acaaccaaaaagaggaccaagaagagagcttctctggttaattcaggttcctacagtata
aatgcagtgccatatcatggaaaaatcgttgtatataatcagcacaaattctcagccaag
gcattaggtgctcatccagaagaaatgtggaaacaaatgttttctgttgattcaatagtc
gagcaattaaagcatctcgacatcaagagggaaagcaatgacattgcatttgaagagcgg
aatgcacttgtccattataatattggagatgatatgcggaatgcactggtcctttacaaa
agagatggcaccgttgtaccctatgatggttcttttggatccatcaggaagcgacgccca
cgcccaaaggttgacctagatcaagaaactaatagagtttggaagcttctaatgggaaac
atcaatagtgaaggcattgacggaacagatgatgagaaggcaaaatggtgggaagaagaa
agggcagtgttctgtggacggtcaaactcatttatagcacggatgcatcttgtacaaggg
gacagacgcttctctccgtggaagggatcagttgtggactcggtgattggagtatttctt
acccagaatgtctcagatcatctctctagttccgcatttatgtcacttgccgcacggttt
cccctcaagtcaaagaacaagccatgctatgatgagaggactagcttagtgattgaaaaa
ccaatagaattcataccagattcagaagagggcataagatggaatgaggtgtcaaatcaa
tcaatctgtggccagagttcgttgactatccatgacattgagcctgatgaagagcaagag
gtagtcaaaagcagtgaatcctctgaaagtagtaccggcattgtcacctctgaaactgaa
ccacatacattcagtcaattgatggcgagcagatcaaccattgagacctccatgaccaga
agggtaagttacatggtagaagaagggacacaaataattgatggaatctcaagtcaaaat
tcagtgatttctggccaaaactctgtgaattctccaattgggcaagcttctgagaaaaaa
gaatcatgctcggagaacatctcagaaggagaatatctcactgatggatcaaagctcaac
aattataacgattgcagatctttcatggagcttctgcgaaaggttggatctcccttgatg
caagatgcttacagccaaggaaatggcaagatggacagtttgaatgatcataaaagcccc
ataggagtgtccatggtcgcatccagtaattgttattggcaccttacttctaactctgga
gctgtgaaggttgactgctttgatatgatccctaaagaaacacaatatggtgatatagcc
aaaaacaaaaaagaagacagtgcaaaagatcacaatgcccttgcagtggaaacggccagt
caaattactgatcaaaataagctgaccttgatcaatcaagaagcatcaagatctcccatg
tcaaataatcagtcatgcatcgacattcaaaaagacaagcatacgagtgtccagtctaca
gccatgcctgttgaagaccccaaagtcactgacaattcattgattcagatgcaaaataac
tacctgcagaaaaatcaatacttacaaaacctttcaggagaaaccacgcatataactgga
agtaccagtgcatttgataggcagcaaaagaatcgacaaaaaacaacagagtctgaaatg
attgagttaggttattcacaaagtaaggagctcaatgagatgaaagctgccaccagaaaa
gcaaaaagcagaagagttggaaatgaaataagagatgacgttgactgggatgctttgaga
aaagaggcagaagcaaatggaaagagagagggaacagaaaacacaatggactcactggac
tgggaagctgtaagatgtgcagatgttaatgagattgccaacacaatcaaagagcgtggg
atgaacaacatacttgcagaacggataaagaacttgcttaatagactggttagagaacat
ggaagcattgatctggaatggttgagagatattccacctgacaaagcaaaagagtatctg
ctaagcattagaggattggggctgaagagtgtggagtgcatacggcttctgacacttcat
catctagcattcccagttgacacaaatgtcggacgcatagctgtacgactgggatgggtc
ccccttcagccactgcctgaatcacttcagctgcatcttctagagctgtaccctgtgctg
gaatcaattcaaaaatacctctggcctcgattgtgcaaacttgaccaaagaacactgtat
gagcttcattatcagatgatcacatttggaaaggtattctgtacaaaaagcaaaccaaat
tgcaatgcatgtccaatgagaggagaatgcagacattttgcaagtgcatttgcaagtgca
aggcttgcccttccaggaccagaagaaaaaagcatagtgagtgcaaccgagaacatatct
ggccaaaaccctgctgtggatgctgctcaactgcccctgcccctgcccctgcccctgccc
caaacagctaaacaatccgaaggaagtcaacagccagaagcaagcaggctcgcagaaagc
aaatccagaatcaccgactatgaacctatcattgaagaaccatcatcaccagaaccagtg
tctacacaagtaacagaaaatgatatggaggatacattctgcgaggatcctgatgaaatt
cccatcatcaaacttaacattgaagaattcactcagaatttacagaactatatgcaagag
aatatggaacttcaagaagctgatatgtccaaggccttagttgctttaactgcagaagct
gcctccattcccgttcccaagcttaagaatgttagtcggttacgaacagagcaccaggta
tacgaacttccagattctcatccccttctgcaaaggttggataggcgagaacctgatgat
ccatgttcataccttcttgccatatggacaccaggcgaaacagcaaactccattcaacca
ctggaaagaagttgcagcttacatgaatgtggcaaattgtgtgatgagaaaacatgtttc
tcgtgcaacaacatacgggaagaaaattctcaaattgttcgagggactctcttgatacca
tgtcgaacagcgatgaggggaagctttcccctcaatggcacatattttcaagttaacgag
gtatttgctgaccatgattctagtctgaatccaattgatgttcctagagcatggatatgg
aacctgcccagacgaactgtgtactttggaacctccataccaacaatattcaaaggtttg
acaacagcaggtattcagcattgtttctggagaggatatgtctgcgttaggggatttgac
cagaagacacgagcaccccgaccactgatggccagattgcattttccagctagcaaatta
acccagacaaaaaagggtgatattagtggtcggtag
DBGET
integrated database retrieval system
