Populus trichocarpa (black cottonwood): 18104348
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Entry
18104348 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18104348
KO
K13210
far upstream element-binding protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18104348
03041 Spliceosome [BR:
pop03041
]
18104348
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
18104348
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
18104348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-GeneID:
18104348
NCBI-ProteinID:
XP_024439291
LinkDB
All DBs
Position
13:10534570..10540714
Genome browser
AA seq
753 aa
AA seq
DB search
MAEEEVVAPAVVPVGSDHKRKLEDLEPETLEEAEPSPADEQEPEEDGKADDVEDGGSPDS
KRLRIDESKTDGLASENGFKGDESDEHAREEAEEPCVENEHGKDDNAEPLSEEVPETNDK
EDPNADNQETNTTDQATVDDSKTEDAEKPSLEDAGKPCAEKLSEEAEEHLSEDQTTSRKM
EVPNDKVGVLIGKGGDTIRYLQYNSGAKIQITRDAEADLQSTTRPVELIGSLSSISKAEK
LINAVIAEADAGGSPSLIAMGLATSAQAAEVGDQLEIPIPNEKVGLIIGRGGETIKGLQA
KSGARIQLIPQHLPEGDESKERTVRVTGDTRQIETAREMIMDVMNQTMRPATLSSSFNQQ
QSYRPRVPTGPAHWGPRGHHSNQQMPYDYHRGPYPTYGGYPPQQMAPRSNYSSGWEQRPP
PNMQGFHPHSGGYDYYSGQGGHVSDHPVSAPMSTPLPGHVSRHSPAPVMGGPPSQVNYNY
GQSHGPDYGHQAPYSQAAPSQQSYGYGYDEPKYPYGHGSSQPAYPQASNQPGYGAQQQYG
KQPSYGMPSQGPPPQSYGPPRPGQPGDASYQGPIQSSQLYGQPPQQQYPYASSGPMQQAY
PPYGSGSASDGYNQAPPASGPGYPQQGGQPVPTYGQPAGQAAAAGYGQVPAGGYGGYPSS
QGFPEQQAANTAGYGYQVSQDPAYGSGPAFSAPTSQQAYAQPTAAQPSYDQSVPQSAGYV
AAPATAPVGYGKTVSPQPGFPQYDSTQMYAAPR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaggaggttgtggcgccggcagtggttcctgtggggtcggatcacaagaga
aagctggaagatttagagcctgaaactctagaagaagctgagccgagtccagccgacgaa
caggagcctgaagaggatgggaaagcagatgacgtggaggatggtggttcgcctgattct
aaacggctaaggatcgatgaaagcaaaaccgatgggttagccagcgaaaatggtttcaaa
ggagatgagtcagatgaacatgcaagggaagaagctgaagagccgtgtgttgagaatgag
catggaaaagatgataatgctgagcctctgtccgaggaggtgccggaaacaaatgataaa
gaagacccaaatgcagataatcaggagactaatactactgaccaagctactgttgatgat
tccaagacggaggatgctgagaaaccatctttagaggatgctgggaaaccttgtgctgaa
aagctgtctgaggaggctgaggaacatctatctgaggatcaaacaacatcgcgtaaaatg
gaggttccaaatgacaaggttggagtacttattggcaagggtggagatactatacgttac
ctgcagtataattctggagctaaaattcaaatcacaagggatgctgaagctgatctacaa
tccacaacaaggccagtggaattaatagggagtttaagtagtataagcaaggctgagaag
ctcatcaatgcagtcatagcagaggctgatgctgggggttccccctctctgatagctatg
ggccttgctactagtgcacaagctgctgaagtgggagatcagctggagattccaattccc
aatgagaaggttggtctaatcataggacggggtggggaaaccatcaaaggtcttcaagcc
aaatcaggggctcgcattcagctgatacctcaacatcttccagaaggggatgaatcaaaa
gaaagaacagtgcgtgtaactggagatacgagacaaattgagacggccagagaaatgata
atggatgtcatgaatcagactatgaggccggcaactctctctagcagctttaaccagcag
cagtcctatcgaccccgagtacccactggcccagctcattggggtccacgtggtcatcat
tcaaaccagcaaatgccgtatgattatcatcggggtccatatccaacttatggtggttat
cctccacaacagatggctcctagaagtaactacagttctggctgggagcaaagacctcct
cctaacatgcaaggctttcatccgcatagtggtggctatgattactatagtggccaagga
ggtcatgtatctgatcatccggtatctgccccaatgtctactccccttcctgggcatgtt
tctcgtcattcccctgcccctgttatgggtggacctccatcccaggtgaattacaattat
ggacagtcccatggtccagattatgggcatcaagctccctattcccaggcagctccttct
cagcagagctatgggtatggatatgatgaaccgaagtatccttatgggcatggaagttct
cagccagcttatccgcaggccagcaatcaaccaggctatggggcacagcagcaatatggc
aagcagccatcgtatggcatgccatcacagggtccacctcctcaatcatatggccctcct
aggcctggtcagccaggagatgcatcttatcaaggtcccattcaatcaagtcaattgtat
ggtcaaccaccacaacagcagtatccatatgcatcaagtgggcccatgcagcaagcatat
cctccttatgggtctggatcagcttccgatgggtataatcaggcaccacctgcatctggc
ccaggctatcctcagcaaggtggccagcctgttccaacatatggacagccagctggacaa
gcagcagcagctggctatggtcaagtccctgctgggggctatggagggtatccatcttca
caaggttttcctgagcagcaagctgcgaacactgcaggttatggctatcaagtgtcccaa
gatcctgcttatggtagtggccctgcattcagtgcaccaaccagccagcaggcttatgct
caaccaacagcagctcaaccaagttatgatcaatcagtcccacaatcggctggttatgtc
gctgctccagcaacagcaccggttggttatgggaaaacggtgtctccacagcctggtttt
ccacaatatgactcaacccagatgtatgctgctccacgctga
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