Populus trichocarpa (black cottonwood): 18105009
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Entry
18105009 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18105009
KO
K01246
DNA-3-methyladenine glycosylase I [EC:
3.2.2.20
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
18105009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18105009
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.20 DNA-3-methyladenine glycosylase I
18105009
DNA repair and recombination proteins [BR:
pop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
18105009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adenine_glyco
RPC5_C
Motif
Other DBs
NCBI-GeneID:
18105009
NCBI-ProteinID:
XP_006375072
UniProt:
U5FRN6
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Position
14:complement(2724116..2727444)
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AA seq
331 aa
AA seq
DB search
MSGATKLRSAEKQMQEPPRAILGPAGNRVRVSEEAKRKIEVLKKSLQKPKKPVEKMSQAA
VKNNLSVDSTCSSDSYSSSSSSGRNVKRNGIKQVKDVPNGGEIKDASSKKDGPVKRCDWI
TPNSDPLYMSFHDEEWGVPVHDDRKLFELLVFSQALAELSWLAILHMRDIFRKLFDQFDP
SSIAQFTEKKLLSLKVNGNLLLSEPKLRAIVENAKQMLKIQQEFGSFSNYCWRFVNQKPL
RNGFRYGRQVPAKTPKAELISKDLMQRGFRCVGPTVVYSFMQVAGIANDHLISCFRYQEC
NADVEKDFKPPKSQEIEIVTKALGNTCFSHN
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggctactaagctaagatcggctgaaaaacaaatgcaggagccaccacgagcg
atacttggtccggcaggaaacagagttagggtttcggaggaggctaaaaggaagattgag
gttttaaagaaatcactgcagaaaccaaagaaacctgtggagaaaatgtctcaagctgct
gttaagaataacttgtcagtggatagcacgtgttcttcggattcttattcttcttcttca
agttctggaaggaatgtgaagcgtaatggaataaaacaagtcaaggatgttcctaatgga
ggtgaaattaaggatgcctcgtcgaagaaagatgggccggttaaaaggtgtgattggatt
actccgaattctgacccactttatatgtctttccacgatgaagaatggggagttccagtt
catgatgacaggaagctgtttgagttacttgtattttcacaagcattagcagaactcagc
tggctagcaattcttcacatgagagacatattcaggaagctgtttgaccaatttgaccca
tcatccattgcacaatttactgagaagaagctcctatcattgaaagttaatgggaatctg
ttgctatctgaaccaaagcttcgtgcaatagtggagaatgctaaacagatgctcaagatt
cagcaggaatttggttccttcagcaactattgctggcggtttgtgaaccagaaaccatta
agaaatggttttcgctatgggcgccaagtacctgcaaagaccccaaaagccgaactgatt
agcaaggatctgatgcaaagagggttccgctgcgttggacccactgttgtttattcattc
atgcaagtggcaggaattgctaatgatcatctgatatcatgcttccgataccaagaatgc
aatgcagacgtcgaaaaggatttcaaaccccccaagagtcaagagatagagatagttact
aaagctttggggaacacatgcttttctcataactaa
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