Populus trichocarpa (black cottonwood): 18105325
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Entry
18105325 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: sister-chromatid cohesion protein 3-like
KO
K06671
cohesin complex subunit SA-1/2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18105325
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
18105325
BRITE hierarchy
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GFIT
Motif
Pfam:
SCD
STAG
PDS5
HEAT_2
Cnd1
SpGH101_helical
Spore_III_AB
Motif
Other DBs
NCBI-GeneID:
18105325
NCBI-ProteinID:
XP_024440404
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All DBs
Position
14:complement(10531138..10540370)
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AA seq
1132 aa
AA seq
DB search
MDDHPETSRNRSKRKRSKTETEERTSDANEEVEERGDDFEEVRPKSKRNRAAKDATSPAV
LNPDQSLIDVIKGNEIQIPQVVKLWVERYEKDPKQAMVELLTTLFEACGAKYRIKKELLD
ETDVDDVVVALVNLARNGEVEDYQGSKRKDFKNFKDNLLSFWDSLIAECQDGPLFDKMLF
DKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFITVAKALGAQRETTQRQLNAENKKRTE
GPRLESLNKRLXDKILVLEEMMRKIFSGLFVHRYRDIDPNIRTSCIESLGVWVLSYPSLF
LQDLYLKYLGWTLNDKNAGVRKASVHALQKLYDADDNVPTLGLFTERFSNRMIELADDSD
VSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLHIDDPAEVRRAIGELVYDHLIAQKFNSPQ
SSSRGSDSGSSEVHLSRMLQILREFSAEPILSIYVIDDVWEYMKAMKDWKCIISMLLDEN
PLIELTDDDATNLVRLLSASVRKAVGERIVPASDTRKQYYNKAQKEIFENNRRHITIAMM
KNYPLLLRKFMADKAKVPSLVEIIVHMNLGKAKVPSLVEIIVHMNLGLYSLKRQENNFKN
VLQLMKQAFLKHGDKEALRSCVKAIKFCSTESQGELKDYALNKLKNLEDELNDKLKSAMK
EAADGDEYSLLVNLKRLYELQLSWSVPIESLYEDIVKVLHSFRNVDDEVVSFLLLNMYLH
VAWTLQSIVNSETVSEASLTSLLSKRNSLFEELEYFLGTPSEDKEGSKCGNQLACRVCII
LAEAWCLFRKANFSSTKLEHLGYCPDTSVLQRFWKLCEQQLNISDETEDDDTKKEYIEET
NRDAVMIASAKLVVSNAVPKEYLTPEIISHFGMHGTSVAEIVKHLITVIKKNDDFPNIFI
EALKRAYDRHLVDLSKSDDKSFTSKSFLECKDLATRLSGTFMGAARNKHKSDILKIVRDG
IEYAFLDAPKQLSFLEGTVVHFVPKLPVIDTLEILKDVQSRTENVNTDEDPSGWRPYHTF
VDSLREKYVKNEGLPDEKERRRSGRPRKRRNIEGKRLFDEESSSEEEDSISGSDREDAHD
EEEKQEEEEEEEAPLIHSIRSSSKLRSLKLSRDENKGQRKGVSASRTSGPSS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccacccggaaacttcccgaaaccgctctaagaggaagaggtccaagaccgag
accgaggagagaacgagcgatgcgaatgaggaggtggaggagcgcggggatgatttcgaa
gaggttcgcccaaaatctaagcgtaaccgtgctgctaaggatgccacttccccagccgtg
ctcaatcccgatcaaagcttgatcgatgttatcaaaggcaatgagatacaaattcctcag
gtggtgaagctttgggttgagcgatacgagaaggatccaaaacaagcaatggttgaactc
ttgaccacgctgtttgaggcatgtggagccaaatatcgtatcaagaaagagttgctggat
gagactgatgttgacgatgttgtcgttgctcttgtcaatcttgctagaaatggtgaggtt
gaagattatcagggttcaaaacggaaggacttcaaaaactttaaagacaacctcctctca
ttctgggatagtttgatcgctgaatgccaagatgggccactttttgataagatgttgttt
gacaaatgcatggactatataatagcattatcatgcactccgccaagagtttaccgtcaa
gttgcatccttgatggggcttcaacttgtcacttcattcataacggtagctaaagcgctt
ggtgcacaacgagaaactactcagagacagttaaatgctgaaaataagaaacgaacagaa
gggcctcgtttggagtcccttaataaaaggttanntgataagatacttgtactagaggaa
atgatgcgcaaaatattttctgggttattcgtgcatcggtaccgggatattgatcctaat
attcgaacatcatgcattgagtctcttggtgtatgggttttgtcatatccatcacttttc
ttgcaggatttatacttaaagtatcttggatggacacttaatgataaaaatgcaggtgtc
agaaaagcatctgttcatgcattgcaaaaactttatgacgcggatgataacgtgcccact
ctcggactatttactgaaagattttccaaccggatgatcgaacttgctgatgacagtgat
gttagtgtagctgtttgtgccataggacttgtaaaacaattactcaggcatcagctttta
cctgatgatgacttgggtccattatatgatttacatattgatgatccagcggaagtcagg
cgtgccataggagaattggtgtatgatcacttaattgcacaaaaatttaatagcccccaa
tctagttcaagaggcagtgacagtggctcttctgaggttcatcttagcagaatgttgcaa
attttgagggagttttcagcagaaccaattctcagcatctatgttattgatgatgtttgg
gaatacatgaaagcaatgaaggattggaagtgtattatttccatgctcctggatgagaat
ccactaattgagcttaccgatgatgatgcaacaaatttggttagactcctttctgcatct
gtcagaaaggctgtaggagagaggattgttccagcttcggatactcgaaagcaatattac
aataaagctcagaaagaaatatttgaaaacaatagacgacacataacaattgcaatgatg
aagaactacccattacttctccgcaaatttatggctgacaaagcaaaagttccatcattg
gttgagatcattgttcatatgaacctagggaaagcaaaagttccatcattggttgagatc
attgttcatatgaacctagggctttattccttaaagaggcaggagaataatttcaaaaat
gtccttcagctcatgaaacaggcttttttaaaacatggtgacaaggaagcgctgagatct
tgtgtgaaggctattaagttctgttccactgagagtcaaggcgagctgaaagattatgct
ctaaataaattgaagaatcttgaagatgaacttaatgataagcttaagtctgcaatgaaa
gaagcagcagatggtgatgaatattctctgcttgtgaatttgaaaaggttatatgagctt
cagttgtcatggtctgtacctattgagagcttatacgaggatattgttaaggttctccac
agttttagaaatgtggatgatgaggttgtcagttttcttcttctcaatatgtatttgcat
gtagcctggacactgcagtctattgtaaatagtgaaactgtctctgaagcatccttaacc
tctctactgtcgaaacgcaattccttgtttgaggaacttgagtattttcttggtacccct
tctgaagacaaggaagggagcaaatgtggaaatcagctagcttgtagagtttgtattata
cttgcagaagcatggtgtttgtttagaaaggcaaatttttcttcaacaaagctcgaacat
ctaggatattgtccagatacatctgttctacaaaggttctggaaactttgtgaacaacag
ttaaatatttcagatgagacagaagatgatgacacaaagaaagagtacattgaggagaca
aacagagatgcagttatgatagcttcagcaaagttggtagttagcaatgcagttcccaag
gaatatcttactccggagatcatttctcactttgggatgcatggaacaagtgttgcagag
atagtcaagcatctaatcactgtcataaagaaaaatgatgattttccaaacattttcata
gaagcattgaaaagggcttatgatcggcatctagtggatctttccaaaagtgatgacaaa
tctttcactagcaaatcttttctagagtgcaaggatcttgctactagactttctgggaca
ttcatgggtgctgctcggaacaagcataaatctgatattctaaaaattgtcagggatggt
attgaatatgctttcttagatgctccaaaacagctctcttttctggaaggtaccgtggtt
cactttgtgcccaagcttcccgtgattgacaccctggaaattctaaaggatgtccaaagc
cggacagagaatgtaaacaccgatgaagatcccagtggctggcgcccttaccacacgttt
gttgacagtttacgagagaagtatgtgaagaatgaaggtttgccagatgagaaagagagg
agacgcagtggtcgtccaaggaagcggcgtaatatagagggaaagagattgtttgatgag
gaaagttcaagtgaagaagaggattcaattagtggatcagatcgagaagatgctcatgat
gaagaagagaaacaggaagaggaggaagaggaagaggctcctttgatacattcgattagg
tcatcatccaagttgaggtcattgaaactttcaagagatgaaaacaaaggccagaggaaa
ggagtttcggcttctagaacatcagggccatcaagctag
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