Populus trichocarpa (black cottonwood): 18106822
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Entry
18106822 CDS
T01077
Name
(RefSeq) polyadenylation and cleavage factor homolog 1 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18106822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18106822
03019 Messenger RNA biogenesis [BR:
pop03019
]
18106822
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18106822
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18106822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
18106822
NCBI-ProteinID:
XP_006372772
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All DBs
Position
17:1306184..1308319
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AA seq
539 aa
AA seq
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MATTLITRKDHHRPRAVPNLHNPVLDSEKRSRTSYMAQQQQGGDYYHRNQLGLQAKKPRV
DRFNNNEAVNFGPKIQSFPQFEGKKVEINYGVSGFDARVQAREPELSNNGVLTPNFRPLP
QLQDQKAEGNNGFFMPSLQAWKPEGNNFVVSRPYPPLSQPFQGKKLGFYNGFSVPNYQVS
RHFQDSSLKVDNAVFNPNHAMQQDQEKKSEVNKGGFMPNLNLFSSKSLGGPLYSMPNPAI
VKPMLNQNVTNMCLLNSQSHSSLASSVNKNGGFTPNPPVMQLNLVNLSATNMPLNSQAQV
ASCYSDLLTTLVGNGVVSLAKHEVQSNNANSCKFNCAPKLLETSNQLVANGCPGLRNSLM
SSLIKKEDDFRGGVVFDANQLKVRHESVIRSLYADMPRQCSTCGIRFKFQEDHSKHMDWH
VIKKRTIKISKQRSISRMWLDGVDMWLAARADVAAVPGFAKADAPVEKEKEEDWMSSTDE
NKVCALCREPFEEFYSHEADDWIFRGAVYLNAEKKSAAESMDRSRLGPAVHAKCRPASK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggctacaacactaataacaaggaaagatcatcatcgccctagggcagtgcctaatctg
cacaatccagttcttgattctgaaaagagatcaagaacaagttacatggcacagcagcaa
caaggtggagactattatcatcgtaatcaactagggcttcaagccaagaaaccgagggtt
gatcgttttaataataatgaggctgtcaatttcggtccaaagattcaatcttttccgcag
tttgagggcaagaaggtggagattaattatggggtttctggtttcgatgctagggttcaa
gcccgtgagccagagttgagtaataatggggttttgacaccaaatttccggcctttgcca
caacttcaagatcagaaagcagaggggaataatgggttttttatgccaagtttgcaagct
tggaagcctgagggtaataattttgtggtttcaaggccgtatcctccactttcgcagcca
tttcaaggcaagaagctagggttttataatgggttttcagtgccaaattatcaagtttct
cgacattttcaagacagtagtttgaaggttgataatgcggttttcaatccaaatcatgct
atgcagcaggatcaagagaagaagtcagaggttaacaaggggggttttatgccgaacctt
aatttgtttagttcaaagtcactaggaggccctttgtattcaatgccaaatcctgccatt
gtaaagcccatgttgaatcaaaatgtaactaacatgtgtttgctgaattcacaatcacat
agttctcttgcgtcttctgttaataaaaatgggggtttcactccaaatcccccagttatg
cagcttaatttggtgaatctgagcgctacaaacatgcctttgaattcacaggctcaagta
gcctcttgctattctgatttgctaaccactttggttggcaatggagtagtttctttggct
aaacatgaagtccaaagtaataatgcaaatagttgcaaattcaattgtgcaccaaagttg
ctggaaaccagcaaccaacttgtggctaatggatgtcctggtttgagaaattcactcatg
agttccttgattaaaaaggaagatgattttaggggtggtgttgtatttgatgcaaaccaa
cttaaggtgaggcatgaatctgtgattagatccttgtatgctgatatgccaagacaatgc
tccacatgtggaatcagattcaagttccaagaagatcatagcaagcatatggattggcat
gtgattaaaaaacggacaatcaagatatctaagcagagaagcatttctcgtatgtggttg
gatggtgtagatatgtggctggctgctagggcagatgttgctgcagttcctggatttgca
aaagctgatgctcctgtagagaaggaaaaagaagaagattggatgagttccactgatgaa
aacaaagtatgtgccttgtgtcgagaaccatttgaagaattctacagccacgaggctgat
gactggatattcagaggagctgtctacctgaacgcggaaaagaaatcagcagctgaaagc
atggataggagtcgattaggtcctgctgtgcatgccaagtgcaggccagcgtccaagtag
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