Populus trichocarpa (black cottonwood): 18111147
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Entry
18111147 CDS
T01077
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18111147
03015 mRNA surveillance pathway
18111147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18111147
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18111147
mRNA cycle factors
P-body specific factors
18111147
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
18111147
NCBI-ProteinID:
XP_006389505
UniProt:
U7E1G0
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Position
3:626401..634415
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AA seq
511 aa
AA seq
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MKVGQSDKTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSYRPGKSSQKHQSCSRAYID
FKRPDDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILKDPEYL
EFLEFIAKPVENLPSAEIQLERREAERAGVAKDAPIVTPLMEFIRQKRAAKSGPRRILSN
GKPSRRAGGSGSPSSSSSKRGSEKKRASTTMYVLRDTVKGTSGKEKSIYAQVPKLDDRQL
SKAVTLGSGSGTEVSEEETAVSGITGTGKKKILLLKGKEKEISLQQSISPSDRNIISSTA
LKSQRHESSGRVIKSILLNKDSRRIQSSGVQSEPQMQTSNLEKDKRPPRPPHALVLKDAN
GTPDDKVVGNDLHGFPNEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSSAYLSTQS
GFDSSQVNHGDVKADTLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADGS
TVEGKSLKRGGASGYGSHEKQVWVQKSSSGS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttggtcagtctgacaagaccaaagtggtggtccgccacttgccaccgggggtt
tctcagccgatgttcgtcgagcaaatcgaccttgctttctctggccgctacaactggctc
tcctatcgtcctggcaagagcagccagaagcatcaatcctgttctagagcctatattgac
tttaaaaggcctgacgatgttattgactttgccgagttctttaacggccacctatttgtt
aatgagaaaggcactcagtttaaagctattgttgagtatgctccttcacagcatgtgcca
aagcagtggtctaagaaagatggtcgtgaaggcaccatattgaaagatcctgagtatttg
gagttccttgaatttattgcaaagcctgtcgagaatcttccaagtgctgaaatacaattg
gagagaagagaagctgaaagagctggtgttgcaaaagatgctcccattgttaccccttta
atggaatttattcgacagaaaagagctgctaagagtggacctcggaggattttgtccaat
gggaaaccgagcagaagggctggtggcagtggaagtccgagctcttcctcatcaaaacga
ggttctgagaagaagagagcttcaacaacaatgtatgttttaagggacactgtgaaaggc
acaagtggaaaagagaaatcaatttatgcacaggttcccaagctagatgaccggcaacta
tctaaagctgtaactttaggttctggatctgggactgaagtatcagaagaggaaactgca
gtttctggaattactggtaccgggaagaagaaaatcctgcttctgaaagggaaagagaag
gaaatttcactgcaacagagcatatcaccatctgatagaaatatcattagttcgaccgct
ttaaagagccagcggcatgaatcctctggaagggtaatcaaaagcatactcttaaacaag
gattcgcgtcgaattcaatcctctggagtccagtctgagccacagatgcaaacctcaaat
ctagaaaaggacaaacgtcctcctcggcccccacatgcattggttttgaaggatgcaaat
ggaacaccagatgacaaggttgttgggaatgatttgcatggttttccaaatgagaagcag
gaaaggcgaacccgaaataaagatagacctgatcgtgtagtgtggactctccgcagatca
gagggatcctatgcaagtgatgaatccttgtcatcatctgcatatctatctacacagtca
gggtttgattcttcacaagtaaaccatggagatgttaaagcggacaccttaaatttaagg
agcggagaagtaaaagcacttggaagtgggcgtagtaatcattcttctttagataatgga
tcacataaacattctggtcgtcggggaccaccacatcctgtgagggatgctgatggctcc
actgttgaggggaagagtcttaaaagaggtggtgcttctggttatgggtcccatgagaag
caagtctgggttcagaagtccagttctggttcttag
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