KEGG   Populus trichocarpa (black cottonwood): 7463008
Entry
7463008           CDS       T01077                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    7463008
  09124 Replication and repair
   03420 Nucleotide excision repair
    7463008
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7463008
   03400 DNA repair and recombination proteins [BR:pop03400]
    7463008
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7463008
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     7463008
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      7463008
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      7463008
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   7463008
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 7463008
NCBI-ProteinID: XP_002305340
UniProt: B9H410
LinkDB
Position
4:15391546..15403113
AA seq 813 aa
MSLPTKRSATTSASTSTASTSASNSFLPMKKAKSQAASACSPLDHNKNGLYHSDDVVFDP
SSMSLDDDLKLVDYRTPPAAANLSRKKATPPQPAKKLVIKLVKAKPTLPTNFEEDTWAKL
QSAIKAIFLKQPALCDLEKLYQAVNDLCLHKMGGNLYLRIEKECETHISAALQSLVGQSP
DLVVFLKLVEECWHDLCDQMLMIRSIALYLDRTYVKQTPNARSLWDMGLQLFRKHLSLSP
EVEHKTVTGLLQMIERERLGETVNRKPLGHLLKMFTSLGIYAESFERPFLECTSEFYAAE
GMTYMQQSDVPDYLKHVESRLNEEQDRCKIYLDSSTKKPLIATAERQLLERHISAILDKG
FMMLMNGHRIEDLKRIYSLFLRVNALESLRQALSMYIRRTGQGIVMDEEKDKDMVSSLLE
FKACLDSIWEESFSKNEGFCITVKDAYEHLINLRQNHPAELIAKFLDEKLRAGNKGTSEE
ELEGTLEKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQF
TNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHE
LNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQ
KLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLLKLPKGRDVEDDDSFVFNEGFAAPLYR
IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFP
IKPADLKKRIESLIDRDYLERDKSNPQIYNYLA
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtctctccccaccaaacgctcagccacaaccagcgccagcactagcacagccagcact
tccgcctcaaatagtttccttccaatgaagaaggccaagtcccaggccgcctccgcctgt
tctcctctcgaccacaacaaaaacggcctctatcactctgacgatgtcgtcttcgatcct
tcttccatgtctctcgacgacgatctcaagctcgtcgactaccgcactcctcccgccgct
gctaatttatctcgcaaaaaagccacccctccacaacccgctaaaaagctcgtaattaag
ctcgtcaaggctaaaccaactctgcctacaaattttgaggaggacacatgggcaaagctg
cagtcagctattaaggctatattcttgaaacaaccagctctttgtgacttggagaaactt
tatcaagctgtcaatgatctttgtctgcataagatggggggaaatctctatctgcgtatt
gaaaaagagtgtgaaacacatatatctgcagcattacaatccttagttggtcaaagcccg
gatttggtggtcttcttaaagcttgttgaggagtgctggcatgatctctgtgaccagatg
ttgatgattcgtagtatagccttgtatctggacagaacatatgtgaaacaaactccaaat
gcacgttcattgtgggacatgggtttgcagcttttccgaaaacatctttctttgtctcct
gaagttgagcacaaaactgtcaccggcctcttgcaaatgattgagagggaaagattaggt
gaaacagttaataggaaaccccttggccatcttttgaagatgttcacttcactaggaatt
tatgcagaaagttttgaaagaccattccttgagtgcacatctgaattttatgctgccgaa
ggcatgacatacatgcagcaatcagatgttccggattacttgaagcatgtggagtcgaga
ttgaatgaagaacaagatcgatgcaagatttaccttgattcaagcactaaaaagccacta
atagcaactgcagaaagacagctacttgaacgccatatatctgctattcttgataagggg
ttcatgatgcttatgaatggacatcggattgaggaccttaagaggatctactcacttttc
ttaagggtcaatgcccttgaatcattaaggcaggcccttagcatgtacatccgaagaacc
gggcagggcattgtcatggatgaagagaaagacaaagatatggtttcctccttgttagag
tttaaggcttgtcttgattcaatatgggaagaaagcttctccaagaatgaaggattttgc
atcaccgtaaaggatgcatacgagcatttaattaatcttcgtcagaaccatcctgctgag
ctgatagcaaaatttttggatgagaagcttcgtgctgggaataagggtacttccgaggag
gagttggagggtacacttgaaaaagttttggttttattcaggtttattcagggtaaggat
gtgtttgaagcattttataagaaggatcttgcaaaaagactgctgttgggaaaaagtgct
tctattgatgcagagaaatctatgatatctaagctgaagactgaatgtggcagccagttt
acaaacaagcttgaaggaatgtttaaggatattgaactgtcaaaggagataaacgagtcc
tttaaacaatcatctcaggccaggactaaacttccatcaggaattgaaatgagtgtacat
gtcttaactactgggtactggcccacatatccacccatggatgttaggcttcctcatgag
ctgaacgtttatcaggatatattcaaagaattctacttaagcaagtatagtggaagacgc
ttaatgtggcaaaattcattgggtcattgtgtgttgaaagctgagtttccgaaaggtaaa
aaggagctggcagtttctctatttcagactgttgttctgatgctgtttaatgatgcccaa
aagcttagttttcaagatatcaaagactctactggcatagaagacaaggaacttagaagg
actttgcagtctctggcgtgtggaaaagttcgtgtcctgctgaagctgcccaaagggagg
gatgtggaggatgatgattcctttgtgttcaatgaaggatttgctgctccactctatcga
ataaaggtaaatgcgatccagatgaaggaaactgtagaggagaacacaagcaccactgag
agagtatttcaggatcgtcaataccaggttgatgccgcgattgtccggataatgaagaca
aggaaggtgctaagtcacacacttcttataactgaactattccagcagctgaagtttcct
ataaagccagctgatttgaagaaaaggatagaaagccttatcgacagggattaccttgag
cgagacaagagcaatcctcagatatacaattacttggcctaa

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