Populus trichocarpa (black cottonwood): 7463320 Help Entry 7463320           CDS       T01077                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pop  Populus trichocarpa (black cottonwood) Pathway pop03030   DNA replication pop03410   Base excision repair pop03420   Nucleotide excision repair pop03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pop00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     7463320    03410 Base excision repair     7463320    03420 Nucleotide excision repair     7463320    03430 Mismatch repair     7463320  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pop03032]     7463320    03400 DNA repair and recombination proteins [BR:pop03400]     7463320 Enzymes [BR:pop01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      7463320     6.5.1.6  DNA ligase (ATP or NAD+)      7463320     6.5.1.7  DNA ligase (ATP, ADP or GTP)      7463320 DNA replication proteins [BR:pop03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     7463320  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      7463320 DNA repair and recombination proteins [BR:pop03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      7463320    NER (nucleotide excision repair)     Other NER factors      7463320    MMR (mismatch excision repair)     Other MMR factors      7463320 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36 Motif Other DBs NCBI-GeneID:  7463320 NCBI-ProteinID:  XP_024464752 LinkDB All DBs Position 9:1235825..1252284 Genome browser AA seq 800 aa AA seqDB search MLRLRPCVSIRSIYSTRHSKLLSPLIPSLFFSKSPSFLKTHTLSLNPNSTMSSSRPSAFD ALMSNARAAASAKKKTQPQPQLKPSSPKKRKTLDHPQNPDKTLSSVQNPQTDESKKLINT PDSSNEPKSEPNSRSDSLLKVNESNKLRVEDKNTELKSKIVLLKKKAGDFKPEMVANWEK GERVPFIFVSLAFDLIANETGRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVAPAHE GVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPLTITK VFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAAL GQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFT PGVPVGPMLAKPTKGVSEIVTKFQDMEFSCEYKYDGERAQIHYLENGSVEIYSRNSERNT GKFPDVVAVISRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNV CIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAV DASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVY GAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIKPDVW FEPKEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQVAE MYNAQKHNHQNNQDDNDDDD NT seq 2403 nt NT seq  +upstreamnt  +downstreamnt atgctcaggctccgtccatgcgtctctatacgctccatttactccacgcgccactccaag cttctctctcctctcattccctctctcttcttctctaaatccccatcatttctaaaaacc cacactctctctctaaaccctaattccacaatgtcctcctctcgcccctccgccttcgat gctctcatgtccaacgcacgtgccgccgcctccgctaagaaaaaaacccaaccccaaccc caattaaaacccagctcccccaaaaaacgcaaaaccctagaccatcctcaaaaccctgat aaaaccctcagttccgtacaaaatccccaaactgatgaatctaaaaagctaattaacact ccagattcatcgaatgagcctaaatcagaaccaaattctaggtctgatagcttattaaaa gtcaatgaatcgaataaactgagagttgaggataaaaatacggagttgaagagcaagatt gtgttgttaaagaagaaagctggggattttaagccggagatggtggctaattgggagaaa ggagagagggttccgtttatatttgtttctttggcttttgatttgatagcgaacgagaca gggaggattgtgattactgatattgtttgtaatatgttgaggactgtaatggatactact ccggaggatttggtggctgtggtttatttgttagctaataaggttgcccctgcgcatgag ggagtggaacttgggattggggaagctttgattattaaggcgctggcggaggcgtgtggg aggaaagagaaggaggttaagaagcagtataaggacttgggagatttgggccttgttgca aaagcaagtcggtcatcccaatctatgatgcgcaagcctgatccattaacaattactaaa gttttcaacacatttcaacagattgctaaggaatccgggaaggatagtcaagacaagaaa aagaaccatatcaaggcacttcttgttgcagccacagactgcgagcctctgtatctaatt cgtctgcttcagacaaagttgagaattggattggcagaacagactcttttggctgccctg ggacaagctgctgtatatactgaagagcattctactcctcctccacacattcagtctcct ttagaagaggctgcaaagattgttaaacaagtttactctgtgcttcctgtctatgataaa atagtccctgctcttcttagtgatggcgtatggaatcttcccaagacatgcagcttcaca cctggtgttccagttggacctatgctggcaaaaccaaccaaaggggtttctgagatagta actaaatttcaggatatggaattctcctgtgaatacaagtatgatggagaacgtgcccag atacattacttggagaatggttcggttgagatatatagtcgaaattctgagcgaaatact ggaaaatttcctgatgttgttgctgtaatttcccgattaaagaggccctcagcaagctca tttattctggattgtgaactagttgcgtatgatagagaaaaaaagaaaattctccccttt cagatcctcagcacccgggcccgaaaaaatgtggtgatgagtgatatcaaggttaatgtt tgcatatatgccttcgacatgttgtatcttaatgaccaaccacttattcagaaagaactg aaagttcgtagagagcatctttacagttcattcgaggaagaacctggattttttcagttt gcaactgcaataacatcaaatgatcttgaagagatacaaaaattcctcgacactgctgtt gatgccagttgtgagggtttaatcatcaaaacaatgaataaggatgctacatatgaacct tcaaggcgatcacataactggctgaaattgaagaaagattatatggaaagtattggagac tcactagatctagtgcctattggtgctttccatggtcgtggaaaacgtacaggtgtctat ggtgcttttctccttgcttgttataatagcaacaacgaagaattccagagcatatgtaaa ataggcactggattttctgaacaagtgcttgaggaacgttctgctagtctccgttcacaa gtgattcccaaaccaaagtcatactatagatttggagatactattaaaccagatgtgtgg tttgaacccaaggaggtgtgggaggtgaaagcagcagacttgactattagccctgttcat cgtgctgcaattggtgaagttgatcctaacaagggaatttcactaagatttccacgtctt gttcgagttcgagaagacaagtctccagagcaagcctcatcatcagagcaggttgctgag atgtataatgcccaaaagcataatcatcaaaacaatcaagatgacaatgatgatgatgat tga

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