Populus trichocarpa (black cottonwood): 7469800
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Entry
7469800 CDS
T01077
Name
(RefSeq) ABC transporter B family member 20 isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
7469800
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
7469800
04147 Exosome [BR:
pop04147
]
7469800
04090 CD molecules [BR:
pop04090
]
7469800
Enzymes [BR:
pop01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
7469800
Transporters [BR:
pop02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
7469800
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
7469800
CD molecules [BR:
pop04090
]
Proteins
7469800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_15
Zeta_toxin
AAA_16
AAA_23
RsgA_GTPase
DUF87
AAA_30
Motif
Other DBs
NCBI-GeneID:
7469800
NCBI-ProteinID:
XP_002311144
UniProt:
B9HM46
LinkDB
All DBs
Position
8:2955903..2964426
Genome browser
AA seq
1398 aa
AA seq
DB search
MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDNSAEAAAAAAAAAQAEAEEEIEEA
EEMEPPPAAVPFSGLFACADRLDWGLMIVGSLAAAAHGTALVVYLHYFGKIIGVLSIKPE
ERFDRFTDLAMHIVYLAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDT
YGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIGFVNCWQIALITLATGPF
IVAAGGISNIFLHRLAESIQDAYAEAASIAEQAVSYSRTLYAFTNETLAKYSYATSLQAT
LRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTSHKAHGGEIVTALFAIILSGLG
LNQAATNFYSFDQGRIAAYRLFEMISRSSSTVNQDGNNLVAVQGNIEFRNVYFSYLSRPE
IPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPNLGEVLLDGENIKNLKLEWL
RSQIGLVTQEPALLSLSIRDNIVYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA
GLALTEEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR
RLSLIRNADYIAVMEEGQLVEMGTHDELITLNGLYAELLKCEEAAKLPRRMPVRNYKETA
AFQVEKDPSTGHSYQEPSSPKIARSPSLQRAPGIFRPPDSMFNSQESPKVLSPPPEKMME
NGLPLDGADKEPSIRRQDSFEMRLPELPKIDVQSAHRQASNGSDPESPVSPLLTSDPKNE
RSHSQTFSRPHSHSDDVPIKVKESKDTKHLEEPSFWRLAELSLAEWLYAVLGSIGAAIFG
SFNPLLAYVISLIVTAYYGRDMQQDVNRWCLIIAIMGMVTVVANFLQHFYFGIMGEKMTE
RVRRMMFSAMLRNEVGWFDEEDNGADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVA
VVIGVLLQWRLALVALATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDSVRNIYT
VVAFCAGNKVMELYRLQLQKIFKQSFFLGMAIGFGFGFSQFLLFACNALLLWYTAYSVKN
HNVNLHTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDREPKIDPDDNSAL
KPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF
YDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEA
ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES
ESSRVVQEALDTLIMGNKTTILIAHRTAMMRHVDNIVVLNGGRIVEEGAHDSLMAKNGLY
VRLMQPHFGKGLRQHRLI
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgatgatctccaggggattattcggatggtccccgccgcatatacaaccgttgacgccg
gtctccgaggtttccgagccgccggagagtccgtctccgtacttagataacagtgcggag
gcggccgcggctgctgctgcggcggctcaagcggaagcagaggaggagatcgaggaggct
gaggagatggagccgccgccagctgctgttcctttctccgggttgtttgcttgtgctgat
aggttagattgggggctcatgatcgttgggtcgcttgcagcggctgcgcacgggactgct
cttgttgtttacttgcattactttgggaagattattggggttttgagtattaagccggag
gagcgatttgacaggtttactgatcttgctatgcacattgtttatttagccgtgggagtt
tttgctgctggttggattgaggtttcctgctggattttaactggggaacgtcagaccgcg
gtcatcaggtcaaagtatgttcaggtattgctcaatcaggacatgagctttttcgataca
tatgggaataacggggatattgttagccaagtattgagtgacgtgctcctcattcaatct
gcattgagtgaaaaggttggaaattatattcataatatggctacatttttcagtggtctt
gctattggatttgtcaactgctggcaaattgcactaataacattagccactggcccattc
attgttgctgctggaggtatctcaaatatatttcttcataggcttgctgagagcattcaa
gatgcatatgctgaagctgctagcattgctgaacaggcagtctcttatagtaggaccttg
tatgcattcacaaatgaaactctggcaaagtattcatatgcaacatcactacaagcaact
ttgagatatggtattttgattagccttgttcaaggacttgggcttggttttacgtatggg
cttgcaatatgttcttgtgccttgcaactttgggttggaaggtttctggttacaagtcat
aaagctcatggtggtgaaatagtaacagccctgtttgctataattttaagtggccttggg
ctgaatcaagctgcaaccaatttctattcatttgaccaaggacgaattgctgcatataga
ctctttgagatgataagtcggtcatcctccacagttaatcaggatgggaacaacctagtg
gcagtgcaaggaaatatcgagtttcgaaatgtttattttagctatctgtctcgtcctgag
attcccatcttgagtggattttacctcactgtaccagctaaaaagacagtggctcttgtt
ggaagaaatggttctggaaagagcagcattatcccactcatggagcgcttttatgatcct
aacttaggagaagttcttcttgatggagagaatattaaaaacctgaaactggaatggctc
agaagccaaatagggctggtcacccaggaacctgccttgctgagtttgagtataagagat
aatattgtatatggacgagatgctactttggatcagattgaggaagctgccaaaatagca
catgcacacacatttatcagttcacttgaaaaaggctacgagacacaggtcggtagggct
ggtttagcattgactgaggagcagaaaattaaactttctattgccagggcagtactttta
aatcctacaattcttctgcttgatgaggttactggtggacttgattttgaagctgagaga
gcagttcaagaggcactagatcttctcatgttgggacgttcaaccattataatagctaga
cgtcttagtctaattaggaatgctgattatatagctgtaatggaggagggtcagcttgtt
gaaatgggtacacatgacgaattaataaccttaaatggtctatatgcagagcttctcaaa
tgcgaagaagcagcaaaacttccaaggaggatgccagttagaaactacaaggagactgct
gctttccaggttgaaaaggatccttccacaggccacagctatcaagaaccatcctcccct
aaaatagccaggtcaccatcacttcagagagctcctggtatatttcggcctccagatagc
atgtttaattcacaagaatcaccaaaagttctcagcccaccaccagagaagatgatggaa
aacggtcttcccttggatggagctgataaggaaccatcaataagaaggcaggatagtttt
gaaatgagactacctgaattacccaagattgatgtccagtctgcacatagacaggcatca
aatggttcagaccctgaatcccctgtttctccacttttgacatctgatcctaaaaatgag
cgttcccactcacagactttcagtcgaccccacagtcactcagatgatgttccaattaaa
gtgaaggaatcaaaggatacaaagcatctggaagaaccatcattttggagactagcagag
cttagtttggcagagtggctttatgctgttttaggaagcattggtgctgctatttttggt
tctttcaatccactacttgcttatgttatttcactgatagtgactgcttattatggacga
gacatgcagcaggatgtaaacaggtggtgcttgataattgccatcatgggtatggtgact
gttgttgccaatttcttgcagcacttctattttggtatcatgggagagaaaatgactgaa
cgtgtccgcagaatgatgttttcagcaatgctgcggaatgaagtcggatggttcgatgaa
gaggataatggtgctgacacattatccatgcgcttggcaaatgatgctacttttgtaaga
gctgcattcagcaaccgactttcaatatttatacaggacagtgctgcagttattgtggct
gttgtcattggggtgctgcttcagtggcgattggctcttgtagcactggcaaccttgcca
gttctcactgtctctgcaattgcacagaagttgtggcttgctggattttccaggggcatc
caggagatgcacagaaaggcatcattggtccttgaggattctgttagaaacatttataca
gttgtggcattctgtgcgggtaataaagtaatggagctctacagattgcaactgcagaaa
atatttaagcagagttttttccttggaatggccattggttttggatttggtttttctcag
tttcttcttttcgcctgcaatgcccttcttctctggtacactgcatactctgtaaagaat
cacaatgtgaatcttcatacggctctcaaggagtatatggttttttcttttgcaacattt
gcactggtggagccttttggattggctccctacattcttaagcggcgaaaatctcttatt
tcagtatttgaaattatagatcgagaacctaagattgacccagatgataactcagcactg
aagcctcctaatgtttatggaagcattgagttgaagaatgtggatttctgttatccaact
cgtccagaaatgttggtattgagcaatttcagtctcaaggtgaatggaggacaaactgta
gctgtggtgggagtttcagggtctggaaaaagcactataatttctttaattgaaagattt
tatgatccagttgccggtcaggtcctactggatggccgggatttaaaactttataatttg
agatggttgaggaaccatcttggtcttgttcagcaggaaccgattatcttctcaacaact
ataagagaaaatattatatatgctaggcacaatgccagcgaggctgagatgaaagaggct
gcaagaattgctaatgctcaccatttcatcagtagtctgcctcatggttatgacacacat
gtgggaatgaggggcgtggaccttaccccagggcagaagcagagaattgcaattgctcga
gtggtgttgaagaatgcacccatcttgttattggatgaagccagctcatccatcgaatct
gaatcaagtcgagtggtacaagaggcactagatactcttattatgggaaacaaaactacc
attttgatagctcatagaactgcaatgatgaggcatgttgacaacattgtggttcttaat
ggaggacgaattgtcgaggaaggggcccatgattctttgatggcaaagaatggtttgtat
gtccgtctgatgcaaccccactttggaaagggtttgcgacaacatcggttgatttaa
DBGET
integrated database retrieval system
