Populus trichocarpa (black cottonwood): 7471740
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Entry
7471740 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7471740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7471740
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7471740
Spliceosome [BR:
pop03041
]
Complex A
U2 snRNP components
U2 related factors
7471740
Complex B
7471740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
7471740
NCBI-ProteinID:
XP_024449877
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All DBs
Position
2:complement(214058..219159)
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AA seq
1179 aa
AA seq
DB search
MEDVKHKSRKDDSERKEDKEDSKRSHRDRDRDRDRDRDRNGERHRDREKRERESIRRSER
DKSSDSDEKEREKEKHKDRDRDRDKDRAARSRDGDKERAKDRNRDRDKDREEKKDRDKDR
EEKRDRDKDREEKRERAKEKEKDREREREREREKRERERERDRERERKERDREEREREKR
EREEREREKRERERERRTREREKCRELSSDSDDDSKDRDKKRRRRDDDDYKERVREQSIS
RSNRHRDNSEEIPRKKSDEEDSDKNVIKTREEELEQEQKKLDEEMEKRRRRVQEWQELRR
KKEETEREKHGEEADVNEPKTGKTWTLEGESDDEEAPPTGKSETDMDLEENAKPDEEVED
AMVVDTENDISAPQNEDDAVNGDEEIDPLDAFMNSMVLPEVEKLNSTLVTHTADDNKTDL
KNKDKKEERINGEQRKKGSHKSLGRIVPGEDSDSDYGDLENGEDPLEEEDDDEFMKRVKK
TKAEKLSIVDHSKIDYNPFRKNFYIEVKEISRMTPEEVVACRKELELKLHGKDVPKPIKT
WHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRH
IKDQPPVEAGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELK
RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD
RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLLELL
GEWYQKGKILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLM
IATSVAARGLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPD
LVKALELSEQVVPQDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKA
QAKEYGYEDEKSDSEDEDEVVRKSVGDVSQQTALAQQIAALAAVSKVPMPAPPISHSVAQ
LLSNGGLPVPPNPGPAVVSVTGLPFVPNNEGAARAAALAAAMNLQHNLARIQADAMPEHY
EAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKVPGPGERKLYLFIEG
PTEQSVKRAKADLKRVLEDITNQTYQLPGGTQPGKYSVV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgtgaaacataaatctagaaaagatgattcggaacggaaggaggacaaagag
gattcaaagaggagtcatagagacagggacagggatagggacagggacagggacaggaat
ggagagaggcatcgagacagagagaagagagaacgtgaaagcatcaggcgttctgagaga
gacaagagtagtgattctgatgaaaaggaaagggagaaagagaagcataaagacagggat
agagacagggataaggatagagcagcaaggagtagggatggtgataaagagagagctaag
gacaggaacagagatagagacaaggacagagaggagaagaaggatagggacaaggacaga
gaggagaagagggatagggacaaggacagagaggagaagagggagagggcaaaggagaaa
gagaaagatagggaaagggaaagggaaagggaaagggagaagagggaacgtgaaagggag
agagatagagaaagggagaggaaggagcgtgacagagaagaaagggagagggagaagagg
gagagagaagaaagggagagggagaagagggagagagaaagggagaggaggactagggaa
agggaaaagtgtagggaattgagcagtgacagtgatgatgattccaaggatcgtgataag
aagcggcgaagaagagatgatgatgactacaaggagagagtgcgcgaacagagcattagc
aggtcaaacaggcacagggataacagtgaagagatcccgaggaaaaagagtgacgaggag
gactctgataagaatgtgattaaaacccgagaagaggagttagaacaggagcagaagaaa
ttggacgaggagatggagaagaggaggaggagagtccaggaatggcaagagctaaggagg
aagaaggaagaaactgagagggaaaagcatggggaagaagctgatgttaatgaacccaag
actggtaaaacctggactcttgaaggagaatccgacgatgaagaagcacctcccaccgga
aaatctgagacggatatggacctggaggaaaatgcaaaacctgatgaagaagttgaagat
gcaatggtagtggacactgagaatgacatctctgctccacaaaatgaggatgatgccgtt
aatggggatgaggaaattgatccacttgatgcttttatgaattctatggtgttacctgag
gttgagaagctaaacagtactctggttactcatactgctgatgacaataaaacagacttg
aagaataaggataagaaggaagagcgaatcaatggagaacagaggaagaaaggctctcac
aaatctctagggagaattgttccaggggaagattctgattcagactatggggatcttgaa
aatggtgaagatcctctagaagaggaggatgatgacgagttcatgaagagggtgaagaaa
acaaaagctgagaaactgtccattgttgaccactcaaagattgattacaatcctttccgg
aagaatttctatattgaagtgaaggagatctcgaggatgactcctgaggaggttgttgcg
tgtaggaaagaactggagttaaaattacatggaaaggatgtgccaaaaccaattaaaacc
tggcaccagacaggactcacaagtaaaattctagagacgataaagaaacttaattatgag
aagccaatgacaattcaagctcaggccctgcctataatcatgagtggccgggactgcata
ggcattgcaaaaactggttcaggcaaaacccttgcgtttgtgctgccaatgctgaggcat
atcaaggaccagcctcctgtggaagctggagaaggaccgattgggcttgtaatggcaccc
acaagggagcttgtgcagcagatccacagcgatataaagaagtttgctaaggccctgagt
atcagatgtgtgcctgtttatggaggttctggtgttgcccaacaaattagtgaattaaag
cgggggacagagatagttgtctgtactccaggcagaatgattgacatactgtgcaccagt
ggaggaaaaatcactaatcttcgcagagttacatatctggttatggatgaagctgatcgg
atgtttgacatggggtttgaacctcaaatcactagaattgtccagaatattcgcccagat
cgtcaaactgtactcttttctgccactttccctcgacaggttgaaactttggctcgtaaa
gtactgaacaaacctgtggaaatacaggtcggtgggaggagtgtggtgaataaggacatc
actcagctggttgaattaagaacagaagatcaaaggtggcttaggcttttagaactactt
ggtgaatggtaccagaagggaaaaattttgatatttgtccaatcacaggacaaatgtgat
tcattgtttaggaacttactgaagtttggttacccttgcctctcacttcatggggctaag
gatcagacagatcgtgaatccaccatttcggattttaagaccaatgtctgcaatttgatg
attgcaacaagtgttgcagccagaggtttagacgtgaaggatctagaattggtaatcaat
tatgatgctccaaaccactatgaggattatgttcaccgtgttggtcggactggccgagct
ggtcgcaaaggctgtgccatcacatttatctccgaggatgatgcaagatatgcaccagat
cttgtaaaagcgttggaactctctgagcaagttgttccacaagatttgaaagctctagct
gatggttttatggcaaaagtgaatcagggtcttgagcaagcccatggaacaggttatggt
ggaagtggttttaaattcaatgaagaggaggatgaaaagagaatggcggcaaagaaagca
caggcaaaagaatatggctatgaggatgagaagtctgattcagaagatgaagatgaagtt
gttcggaagtcagtcggtgacgtctcacagcagactgcccttgctcagcagatagctgct
cttgctgctgtctcaaaagtccccatgcctgcaccaccaatttctcactctgttgctcaa
ttgctttctaatggtggattacctgttcctcccaatccaggtccagctgttgtttctgtt
actgggctgccttttgttccaaataatgaaggggcagccagggcagcagcacttgcagct
gccatgaatttgcaacacaacctggcaaggatccaagctgatgcaatgcctgaacattat
gaagcagagctggaaatcaatgattttccccaaaatgctcggtggaaggttacccacaag
gaaacattgggcccaatttcagattggactggggctgccattactaccagggggcagttt
tttccaccaggcaaggtgccgggaccaggagagcgcaagctctacttgttcattgagggt
cctactgaacagtctgtcaagagagctaaagctgacctaaaacgtgttttggaagacatc
acgaaccagacataccaacttcctggtggaactcaaccaggaaaatactcggttgtatga
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